MultiPhen-package       MultiPhen, a package for the genetic
                        association testing of multiple phenotypes
mPhen                   A function for the genetic association testing
                        of multiple phenotypes
mPhen.assoc             A function for the genetic association testing
                        of multiple phenotypes
mPhen.cca               Sparse canonical correlation analysis
mPhen.defineOptions     Defines and modifies options.
mPhen.options           Retrieves default mPhen options, and
                        descriptions.
mPhen.plotCorrelation   Plots correlation between phenotype values
                        conditional on genotype
mPhen.preparePheno      Prepare phenotype data for analysis
mPhen.readGenotypes     Open, and read from a read connection to a
                        genotype file
mPhen.readPhenoFiles    Read and merge phenotype files
mPhen.sampleCovar       Generates a covariance matrix.
mPhen.sampleGeno        Sample genotypes
mPhen.simulate          Simulates phenotypes according to a correlation
                        structure.
mPhen.writeOutput       Prepares output files and plots from MultiPhen
                        results
pheno                   A dummy phenotype dataset that provides an
                        example of the input phenotype data used by the
                        package
read.plink              A function to read (small) binary PLINK binary
                        files in a R session
snps                    A dummy snp dataset that provides an example of
                        the input snp data used by the package
snps.imputed            Imputed SNP dataset
