R: Multivariate Morphometric Analysis

# Multivariate Morphometric Analysis

## Documentation for package ‘MorphoTools2’ version 1.0.2.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

boxMTest | Box's M-test for Homogeneity of Covariance Matrices
boxplotAll | Box Plots
boxplotCharacter | Box Plots
cda.calc | Canonical Discriminant Analysis
cdadata | Class Cdadata
centaurea | 25 Morphological Characters of Three Species of the _Centaurea phrygia_ Complex
characters | List Morphological Characters
classif.knn | Classificatory Discriminant Analysis
classif.lda | Classificatory Discriminant Analysis
classif.matrix | Format the Classifdata to Summary Table
classif.qda | Classificatory Discriminant Analysis
classifdata | Class classifdata
classifSample.knn | Classificatory Discriminant Analysis
classifSample.lda | Classificatory Discriminant Analysis
classifSample.qda | Classificatory Discriminant Analysis
clust | Hierarchical Clustering
cormat | Correlations of Characters
cormatSignifTest | Correlations of Characters
descrAll | Descriptive Statistics
descrPopulation | Descriptive Statistics
descrTaxon | Descriptive Statistics
exportRes | Export Data
head.classifdata | Return the First or Last Parts of an Object
head.morphodata | Return the First or Last Parts of an Object
histAll | Histograms of Characters
histCharacter | Histograms of Characters
keepCharacter | Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepPopulation | Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepSample | Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepTaxon | Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
knn.select | Search for the Optimal K-nearest Neighbours
missingCharactersTable | Summarize Missing Data
missingSamplesTable | Summarize Missing Data
morphodata | Class morphodata
naMeanSubst | Replace Missing Data by Population Average
nmds.calc | Non-metric Multidimensional Scaling (NMDS)
nmdsdata | Class nmdsdata
pca.calc | Principal Component Analysis
pcadata | Class pcadata
pcoa.calc | Principal Coordinates Analysis (PCoA)
pcoadata | Class pcoadata
plot3Dpoints | The Default Scatterplot 3D Function
plotAddEllipses | Add Prediction Ellipses to a Plot
plotAddLabels.characters | Add Labels to a Plot
plotAddLabels.points | Add Labels to a Plot
plotAddLegend | Add Legend to a Plot
plotAddSpiders | Add Spiders to a Plot
plotBiplot | The Default Biplot Function
plotCharacters | Draws Character's Contribution as Arrows
plotPoints | The Default Scatterplot Function
populations | Data Input and Description
populOTU | Population Means
qqnormAll | Quantile-Quantile Plots
qqnormCharacter | Quantile-Quantile Plots
read.morphodata | Data Input and Description
removeCharacter | Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removePopulation | Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removeSample | Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removeTaxon | Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
samples | Data Input and Description
shapiroWilkTest | Shapiro-Wilk Normality Test
stepdisc.calc | Stepwise Discriminant Analysis
summary | Object Summaries
summary.cdadata | Object Summaries
summary.classifdata | Object Summaries
summary.morphodata | Object Summaries
summary.nmdsdata | Object Summaries
summary.pcadata | Object Summaries
summary.pcoadata | Object Summaries
tail.classifdata | Return the First or Last Parts of an Object
tail.morphodata | Return the First or Last Parts of an Object
taxa | Data Input and Description
transformCharacter | Transformation of Character
viewMorphodata | Invoke a Data Viewer