# Generated by roxygen2: do not edit by hand

S3method(plot,population)
S3method(summary,population)
export(add.array)
export(add.combi)
export(add.diag)
export(add.diversity)
export(add.fixed.effects)
export(add.founder.kinship)
export(analyze.bv)
export(analyze.population)
export(breeding.diploid)
export(breeding.intern)
export(breeding.intern1)
export(breeding.intern2)
export(breeding.intern3)
export(breeding.intern4)
export(breeding.intern5)
export(breeding.intern6)
export(breeding.intern7)
export(breeding.intern8)
export(bv.development)
export(bv.development.box)
export(bv.standardization)
export(calculate.bv)
export(check.parents)
export(clean.up)
export(codeOriginsR)
export(combine.traits)
export(computing.costs)
export(computing.costs.cohorts)
export(computing.snps)
export(creating.diploid)
export(creating.phenotypic.transform)
export(creating.trait)
export(decodeOriginsR)
export(demiraculix)
export(derive.loop.elements)
export(diag.mobps)
export(effect.estimate.add)
export(exist.cohort)
export(founder.simulation)
export(get.admixture)
export(get.age.point)
export(get.allele.freq)
export(get.bv)
export(get.bve)
export(get.class)
export(get.cohorts)
export(get.cohorts.individual)
export(get.computing.time)
export(get.creating.type)
export(get.culling.time)
export(get.culling.type)
export(get.cullingtime)
export(get.database)
export(get.death.point)
export(get.dendrogram)
export(get.dendrogram.heatmap)
export(get.dendrogram.trait)
export(get.distance)
export(get.effect.freq)
export(get.effective.size)
export(get.fixed.effects.p)
export(get.geno)
export(get.geno.time)
export(get.genotyped)
export(get.genotyped.snp)
export(get.haplo)
export(get.id)
export(get.index)
export(get.infos)
export(get.is.first)
export(get.is.last)
export(get.litter)
export(get.litter.effect)
export(get.maf)
export(get.map)
export(get.ngen)
export(get.nindi)
export(get.npheno)
export(get.ntrait)
export(get.pca)
export(get.pedigree)
export(get.pedigree.visual)
export(get.pedigree2)
export(get.pedigree3)
export(get.pedigree_old)
export(get.pedmap)
export(get.pen)
export(get.pen.effect)
export(get.pheno)
export(get.pheno.off)
export(get.pheno.off.count)
export(get.pheno.single)
export(get.pheno.time)
export(get.phylogenetic.tree)
export(get.plink)
export(get.pool)
export(get.pool.founder)
export(get.qtl)
export(get.qtl.effects)
export(get.qtl.variance)
export(get.recombi)
export(get.reliability)
export(get.selectionbve)
export(get.selectionindex)
export(get.sex)
export(get.size)
export(get.snapshot)
export(get.snapshot.single)
export(get.time.point)
export(get.trafo.p)
export(get.trafo.p.single)
export(get.trait.name)
export(get.uhat)
export(get.variance)
export(get.variance.components)
export(get.vcf)
export(group.diff)
export(inbreeding.emp)
export(inbreeding.exp)
export(insert.bv)
export(insert.bve)
export(insert.pheno)
export(insert.pheno.single)
export(json.simulation)
export(kinship.development)
export(kinship.emp)
export(kinship.emp.fast)
export(kinship.emp.fast.between)
export(kinship.exp)
export(ld.decay)
export(matrix.posdef)
export(merging.cohorts)
export(merging.trait)
export(miraculix)
export(mutation.intro)
export(new.base.generation)
export(ogc.mobps)
export(optimize.cores)
export(pedigree.matrix)
export(pedigree.simulation)
export(recalculate.bv)
export(recalculate.manual)
export(recombination.function.haldane)
export(renaming.cohort)
export(rowMedian)
export(set.age.point)
export(set.class)
export(set.default)
export(set.mean.pool)
export(set.time.point)
export(sortd)
export(vlist)
