MiscMetabar-package	MiscMetabar-package
accu_plot	accu_plot
accu_plot_balanced_modality	accu_plot_balanced_modality
accu_samp_threshold	accu_samp_threshold
add_blast_info	add_blast_info
add_dna_to_phyloseq	add_dna_to_phyloseq
add_funguild_info	add_funguild_info
add_info_to_sam_data	add_info_to_sam_data
add_new_taxonomy_pq	add_new_taxonomy_pq
adonis_phyloseq	MiscMetabar-deprecated
adonis_pq	adonis_pq
adonis_rarperm_pq	adonis_rarperm_pq
aldex_pq	aldex_pq
all_object_size	all_object_size
ancombc_pq	ancombc_pq
are_modality_even_depth	are_modality_even_depth
assign_blastn	assign_blastn
assign_dada2	assign_dada2
assign_idtaxa	assign_idtaxa
assign_mmseqs2	assign_mmseqs2
assign_sintax	assign_sintax
assign_vsearch_lca	assign_vsearch_lca
asv2otu	postcluster_pq
as_binary_otu_table	as_binary_otu_table
biplot_physeq	MiscMetabar-deprecated
biplot_pq	biplot_pq
blast_pq	blast_pq
blast_to_derep	blast_to_derep
blast_to_phyloseq	blast_to_phyloseq
build_phytree_pq	build_phytree_pq
chimera_detection_vs	chimera_detection_vs
chimera_removal_vs	chimera_removal_vs
circle_pq	circle_pq
clean_physeq	MiscMetabar-deprecated
clean_pq	clean_pq
compare_pairs_pq	compare_pairs_pq
count_seq	count_seq
css_pq	css_pq
cutadapt_remove_primers	cutadapt_remove_primers
data_fungi	data_fungi
data_fungi_mini	data_fungi_mini
data_fungi_sp_known	data_fungi_sp_known
diff_fct_diff_class	diff_fct_diff_class
distri_1_taxa	distri_1_taxa
dist_bycol	dist_bycol
dist_pos_control	dist_pos_control
divent_hill_matrix_pq	divent_hill_matrix_pq
fac2col	fac2col
filter_asv_blast	filter_asv_blast
filter_taxa_blast	filter_asv_blast
filter_trim	filter_trim
filt_taxa_pq	filt_taxa_pq
filt_taxa_wo_NA	filt_taxa_wo_NA
find_mmseqs2	find_mmseqs2
find_vsearch	find_vsearch
format2dada2	format2dada2
format2dada2_species	format2dada2_species
format2sintax	format2sintax
formattable_pq	formattable_pq
funguild_assign	funguild_assign
funky_color	funky_color
get_file_extension	get_file_extension
get_funguild_db	get_funguild_db
ggaluv_pq	ggaluv_pq
ggbetween_pq	ggbetween_pq
ggscatt_pq	ggscatt_pq
ggVenn_phyloseq	MiscMetabar-deprecated
ggvenn_pq	ggvenn_pq
glmutli_pq	glmutli_pq
gmpr_pq	gmpr_pq
graph_test_pq	graph_test_pq
hill_acc_pq	hill_acc_pq
hill_bar_pq	hill_bar_pq
hill_curves_pq	hill_curves_pq
hill_phyloseq	MiscMetabar-deprecated
hill_pq	hill_pq
hill_test_rarperm_pq	hill_test_rarperm_pq
hill_tuckey_phyloseq	MiscMetabar-deprecated
hill_tuckey_pq	hill_tuckey_pq
iNEXT_pq	iNEXT_pq
install_mmseqs2	install_mmseqs2
install_vsearch	install_vsearch
is_cutadapt_installed	is_cutadapt_installed
is_falco_installed	is_falco_installed
is_krona_installed	is_krona_installed
is_mmseqs2_installed	is_mmseqs2_installed
is_mumu_installed	is_mumu_installed
is_swarm_installed	is_swarm_installed
is_vsearch_installed	is_vsearch_installed
krona	krona
LCBD_pq	LCBD_pq
learn_idtaxa	learn_idtaxa
lefser_pq	lefser_pq
list_fastq_files	list_fastq_files
lulu	lulu
lulu_phyloseq	MiscMetabar-deprecated
lulu_pq	lulu_pq
mcknight_residuals_pq	mcknight_residuals_pq
merge_krona	merge_krona
merge_samples2	merge_samples2
merge_samples2,otu_table-method	merge_samples2
merge_samples2,phyloseq-method	merge_samples2
merge_samples2,sample_data-method	merge_samples2
merge_taxa_vec	merge_taxa_vec
merge_taxa_vec,otu_table-method	merge_taxa_vec
merge_taxa_vec,phylo-method	merge_taxa_vec
merge_taxa_vec,phyloseq-method	merge_taxa_vec
merge_taxa_vec,taxonomyTable-method	merge_taxa_vec
merge_taxa_vec,XStringSet-method	merge_taxa_vec
MiscMetabar-deprecated	MiscMetabar-deprecated
mmseqs2_clustering	mmseqs2_clustering
multipatt_pq	multipatt_pq
multiplot	multiplot
multitax_bar_pq	multitax_bar_pq
multi_biplot_pq	multi_biplot_pq
mumu_pq	mumu_pq
normalize_prop_pq	normalize_prop_pq
no_legend	no_legend
otu_circle	MiscMetabar-deprecated
perc	perc
phyloseq_to_edgeR	phyloseq_to_edgeR
physeq_graph_test	MiscMetabar-deprecated
physeq_or_string_to_dna	physeq_or_string_to_dna
plot_ancombc_pq	plot_ancombc_pq
plot_complexity_pq	plot_complexity_pq
plot_deseq2_phyloseq	MiscMetabar-deprecated
plot_deseq2_pq	plot_deseq2_pq
plot_edgeR_phyloseq	MiscMetabar-deprecated
plot_edgeR_pq	plot_edgeR_pq
plot_guild_pq	plot_guild_pq
plot_LCBD_pq	plot_LCBD_pq
plot_mt	plot_mt
plot_ordination_pq	plot_ordination_pq
plot_refseq_extremity_pq	plot_refseq_extremity_pq
plot_refseq_pq	plot_refseq_pq
plot_SCBD_pq	plot_SCBD_pq
plot_seq_ratio_pq	plot_seq_ratio_pq
plot_tax_pq	plot_tax_pq
plot_tsne_pq	plot_tsne_pq
plot_var_part_pq	plot_var_part_pq
postcluster_pq	postcluster_pq
profile_hill_pq	profile_hill_pq
psmelt_samples_pq	psmelt_samples_pq
rarefy_even_depth_pq	rarefy_even_depth_pq
rarefy_pq	rarefy_pq
rarefy_sample_count_by_modality	rarefy_sample_count_by_modality
read_phyloseq	MiscMetabar-deprecated
read_pq	read_pq
rename_samples	rename_samples
rename_samples_otu_table	rename_samples_otu_table
reorder_distinct_colors	reorder_distinct_colors
reorder_taxa_pq	reorder_taxa_pq
resolve_vector_ranks	resolve_vector_ranks
ridges_pq	ridges_pq
ridges_sam_pq	ridges_sam_pq
rotl_pq	rotl_pq
sample_data_with_new_names	sample_data_with_new_names
sam_data_matching_names	sam_data_matching_names
sankey_phyloseq	MiscMetabar-deprecated
sankey_pq	sankey_pq
save_pq	save_pq
search_exact_seq_pq	search_exact_seq_pq
select_one_sample	select_one_sample
select_taxa	select_taxa-methods
select_taxa,otu_table,character-method	select_taxa-methods
select_taxa,phylo,character-method	select_taxa-methods
select_taxa,phyloseq,character-method	select_taxa-methods
select_taxa,sample_data,character-method	select_taxa-methods
select_taxa,taxonomyTable,character-method	select_taxa-methods
select_taxa,XStringSet,character-method	select_taxa-methods
signif_ancombc	signif_ancombc
simplify_taxo	simplify_taxo
SRS_curve_pq	SRS_curve_pq
srs_pq	srs_pq
subsample_fastq	subsample_fastq
subset_samples_pq	subset_samples_pq
subset_taxa_pq	subset_taxa_pq
subset_taxa_tax_control	subset_taxa_tax_control
summary_plot_phyloseq	MiscMetabar-deprecated
summary_plot_pq	summary_plot_pq
swarm_clustering	swarm_clustering
taxa_as_columns	taxa_as_columns
taxa_as_rows	taxa_as_rows
taxa_only_in_one_level	taxa_only_in_one_level
tax_bar_pq	tax_bar_pq
tax_datatable	tax_datatable
tbl_sum_samdata	tbl_sum_samdata
tbl_sum_taxtable	tbl_sum_taxtable
Tengeler2020_pq	Tengeler2020_pq
tmm_pq	tmm_pq
track_wkflow	track_wkflow
track_wkflow_samples	track_wkflow_samples
transform_pq	transform_pq
transp	transp
treemap_pq	treemap_pq
tsne_pq	tsne_pq
umap_pq	umap_pq
unique_or_na	unique_or_na
unwanted_tax_patterns	unwanted_tax_patterns
upset_pq	upset_pq
upset_test_pq	upset_test_pq
var_par_pq	var_par_pq
var_par_rarperm_pq	var_par_rarperm_pq
venn_phyloseq	MiscMetabar-deprecated
venn_pq	venn_pq
verify_pq	verify_pq
verify_tax_table	verify_tax_table
vsearch_clustering	vsearch_clustering
vst_pq	vst_pq
vs_search_global	vs_search_global
write_phyloseq	MiscMetabar-deprecated
write_pq	write_pq
