R: Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations

# Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations

## Documentation for package ‘MatrixEQTL’ version 2.3

- DESCRIPTION file
- Code demos. Use demo() to run them.

## Help Pages

MatrixEQTL-package | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
as.matrix-method | Class 'SlicedData' for storing large matrices
colMeans-method | Class 'SlicedData' for storing large matrices
colnames-method | Class 'SlicedData' for storing large matrices
colnames<--method | Class 'SlicedData' for storing large matrices
colSums-method | Class 'SlicedData' for storing large matrices
Covariates | Artificial data for Matrix eQTL sample code: Covariates.
dim-method | Class 'SlicedData' for storing large matrices
GE | Artificial data for Matrix eQTL sample code: Gene expression.
geneloc | Artificial data for Matrix eQTL sample code: Gene location file.
length-method | Class 'SlicedData' for storing large matrices
MatrixEQTL | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
MatrixEQTL_cis_code | Sample code for cis/trans-eQTL analysis with Matrix eQTL
Matrix_eQTL_engine | Main function for fast eQTL analysis in MatrixEQTL package
Matrix_eQTL_main | Main function for fast eQTL analysis in MatrixEQTL package
modelANOVA | Constant for 'Matrix_eQTL_engine'.
modelLINEAR | Constant for 'Matrix_eQTL_engine'.
modelLINEAR_CROSS | Constant for 'Matrix_eQTL_engine'.
NCOL-method | Class 'SlicedData' for storing large matrices
ncol-method | Class 'SlicedData' for storing large matrices
NROW-method | Class 'SlicedData' for storing large matrices
nrow-method | Class 'SlicedData' for storing large matrices
plot.MatrixEQTL | Plot histogram or QQ-plot of all p-values
rowMeans-method | Class 'SlicedData' for storing large matrices
rownames-method | Class 'SlicedData' for storing large matrices
rownames<--method | Class 'SlicedData' for storing large matrices
rowSums-method | Class 'SlicedData' for storing large matrices
show-method | Class 'SlicedData' for storing large matrices
SlicedData | Class 'SlicedData' for storing large matrices
SlicedData-class | Class 'SlicedData' for storing large matrices
SNP | Artificial data for Matrix eQTL sample code: Genotype.
snpsloc | Artificial data for Matrix eQTL sample code: SNP location file.
summary.SlicedData | Class 'SlicedData' for storing large matrices
[[-method | Class 'SlicedData' for storing large matrices
[[<--method | Class 'SlicedData' for storing large matrices