AAVE	PerformanceMetric
AAVY	PerformanceMetric
addMMPs	addMMPs
addMPs	checkMSE
Albacore	Stock-class-objects
Albacore_TwoFleet	MOM-class-objects
alphaconv	alphaconv
applyMMP	applyMMP
applyMP	applyMP
ASAP2Data	ASAP2OM
ASAP2OM	ASAP2OM
Assess2MOM	Assess2MOM
Assess2OM	Assess2OM
Atlantic_mackerel	Data-class-objects
avail	avail
Awatea2OM	Awatea2OM
BAM2MOM	BAM2MOM
BAM2OM	BAM2MOM
betaconv	alphaconv
BlankSelPlot	BlankSelPlot
Blow_opt	Blow_opt
Bluefin_tuna	Stock-class-objects
Bluefin_tuna_WAtl	Stock-class-objects
Blue_shark	Stock-class-objects
boxplot.Data	boxplot.Data
Butterfish	Stock-class-objects
CalcAsymptoticDist	CalcAsymptoticDist
calcMean	calcMean
CalcMPDynamics	CalcMPDynamics
CalcMPDynamics_MF	CalcMPDynamics_MF
calcProb	calcProb
calcRefYield	calcRefYield
CalculateQ	CalculateQ
CALsimp	CALsimp
Can	Can
Cant	Can
char.log-class	char.log-class
CheckDuplicate	CheckDuplicate
checkHerm	Herm-int
CheckMPs	CheckMPs
checkMSE	checkMSE
CheckOM	CheckOM
China_rockfish	Data-class-objects
ChkYrs	ChkYrs
Choose	Choose
ChooseEffort	Choose
ChooseM	Choose
ChooseSelect	Choose
Cobia	Data-class-objects
CombineMMP	CombineMMP
Converge	Converge
COSEWIC_Blow	runCOSEWIC
COSEWIC_Dplot	runCOSEWIC
COSEWIC_Hplot	runCOSEWIC
COSEWIC_Pplot	runCOSEWIC
COSEWIC_report	runCOSEWIC
COSEWIC_tab	runCOSEWIC
COSEWIC_tab_formatted	runCOSEWIC
Cos_thresh_tab	Cos_thresh_tab
cparscheck	cparscheck
Cplot	Cplot
CSRA	CSRA
CSRAfunc	CSRAfunc
curEref	FMSYref
cv	cv
Data-class	Data-class
Data-class-objects	Data-class-objects
Data2csv	Data2csv
DataDescription	DataDescription
DataDir	DataDir
DataInit	DataInit
DataSlots	DataSlots
Data_xl	Data_xl
DecE_Dom	Fleet-class-objects
DecE_HDom	Fleet-class-objects
DecE_NDom	Fleet-class-objects
derive_beta_par	sample_steepness2
DFO_bar	DFO_bar
DFO_hist	DFO_hist
DFO_plot	DFO_plot
DFO_plot2	DFO_plot2
DFO_proj	DFO_proj
DFO_quant	DFO_quant
DFO_report	DFO_report
DFO_spider	DFO_spider
DFO_tab	DFO_tab
DFO_tab_formatted	DFO_tab_formatted
DLMDataDir	DLMDataDir
DLMdiag	Can
dnormal	dnormal
doHCR	doHCR
doIfreq	doIfreq
Dom	Dom
doRec	doRec
Emp	Emp
Example_datafile	Data-class-objects
expandHerm	Herm-int
Fease	Fease
fetch.file.names	iSCAM
FlatE_Dom	Fleet-class-objects
FlatE_HDom	Fleet-class-objects
FlatE_NDom	Fleet-class-objects
Fleet-class	Fleet-class
Fleet-class-objects	Fleet-class-objects
FleetDescription	FleetDescription
FMSYref	FMSYref
FMSYref50	FMSYref
FMSYref75	FMSYref
GenerateRandomWalk	GenerateRandomWalk
Generic_DecE	Fleet-class-objects
Generic_FlatE	Fleet-class-objects
Generic_Fleet	Fleet-class-objects
Generic_IncE	Fleet-class-objects
Generic_Obs	Obs-class-objects
genSizeCompWrap	genSizeCompWrap
getAFC	getAFC
getBlow	getBlow
getclass	getclass
getDataList	getDataList
getEffhist	getEffhist
getfifth	genSizeCompWrap
getfirstlev	getfirstlev
getmov2	getmov2
getMP	getMP
getnIVs	getnIVs
getq_multi_MICE	getq_multi_MICE
getsel	getsel
Gulf_blue_tilefish	Data-class-objects
hconv	hconv
Herm-int	Herm-int
Herring	Stock-class-objects
Hist-class	Hist-class
hist2	hist2
HistDescription	HistDescription
HistMICE	HistMICE
hrate	hrate
Imp-class	Imp-class
Imp-class-objects	Imp-class-objects
ImpDescription	ImpDescription
Imprecise_Biased	Obs-class-objects
Imprecise_Unbiased	Obs-class-objects
IncE_HDom	Fleet-class-objects
IncE_NDom	Fleet-class-objects
initialize	initialize-methods
initialize,Data-method	initialize-methods
initialize,DLM_general-method	initialize-methods
initialize,Fease-method	initialize-methods
initialize,Fleet-method	initialize-methods
initialize,MSE-method	initialize-methods
initialize,Obs-method	initialize-methods
initialize,OM-method	initialize-methods
initialize,Stock-method	initialize-methods
initialize-methods	initialize-methods
Input	Input
iSCAM	iSCAM
iSCAM2Data	iSCAM2OM
iSCAM2OM	iSCAM2OM
iSCAMcomps	iSCAMcomps
iSCAMinds	iSCAMinds
joinData	joinData
joinHist	checkMSE
joinMSE	checkMSE
join_plots	join_plots
Kplot	Kplot
L2A	L2A
label.class-class	label.class-class
Lag_Data	Lag_Data
ldim	ldim
LH2OM	LH2OM
LHdatabase	LHdatabase
LinInterp	LinInterp
load.iscam.files	iSCAM
Low_Effort_Non_Target	Fleet-class-objects
LTY	PerformanceMetric
Mackerel	Stock-class-objects
makeMOM	makeMOM
makemov	makemov
makemov2	makemov2
makeRel	makeRel
makeTransparent	makeTransparent
mconv	sdconv
ML2D	ML2D
MMSE-class	MMSE-class
MOM-class	MOM-class
MOM-class-objects	MOM-class-objects
MOM_agg_fleets	SS2MOM
movestockCPP	movestockCPP
movfit_Rcpp	movfit_Rcpp
MPCalcsNAs	MPCalcsNAs
MPtype	MPtype
MPurl	MPurl
MSE-class	MSE-class
MSEDescription	MSEDescription
MSEextra	MSEextra
MSYCalcs	MSYCalcs
multiData	multiData
multiDataS	multiDataS
multidebug	multidebug
multiMSE	multiMSE
NAor0	NAor0
Needed	Can
NFref	FMSYref
NIL	NIL
NOAA_plot	NOAA_plot
NOAA_plot2	TradePlot
Obs-class	Obs-class
Obs-class-objects	Obs-class-objects
ObsDescription	ObsDescription
OM-class	OM-class
OM-class-objects	OM-class-objects
OMDescription	OMDescription
OMdoc	OMdoc
OMexample	OMexample
OMinit	OMinit
OneRep	OneRep
optCPU	optCPU
optMSY_eq	optMSY_eq
optQ	optQ
optYield	optYield
ourReefFish	Data-class-objects
Overages	Imp-class-objects
P10	PerformanceMetric
P100	PerformanceMetric
P50	PerformanceMetric
Perfect_Imp	Imp-class-objects
Perfect_Info	Obs-class-objects
PerformanceMetric	PerformanceMetric
PGK	PerformanceMetric
plot,MOM,missing-method	plot.MOM
plot.Data	plot.Data
plot.Fleet	plot.Stock
plot.Hist	plot.Stock
plot.Imp	plot.Stock
plot.MMSE	plot.MMSE
plot.MOM	plot.MOM
plot.MSE	plot.MSE
plot.Obs	plot.Stock
plot.OM	plot.Stock
plot.pars	plot.Stock
plot.Stock	plot.Stock
plotFun	plotFun
plotmulti	plotmulti
plotOFL	plotOFL
plotquant	plotquant
plotRel	plotRel
plot_mov	simmov
plot_SS2MOM	SS2MOM
plot_SS2OM	SS2MOM
PMLimit	PMLimit
PMObj	PMLimit
PMobj-class	PMobj-class
PNOF	PerformanceMetric
popdynCPP	popdynCPP
popdynMICE	popdynMICE
popdynOneMICE	popdynOneMICE
popdynOneTScpp	popdynOneTScpp
Porgy	Stock-class-objects
Pplot	Pplot
Pplot2	Pplot2
Precise_Biased	Obs-class-objects
Precise_Unbiased	Obs-class-objects
predict.Rel	makeRel
predictLH	LH2OM
print.multiHist	print.multiHist
print.Rel	makeRel
prob.class-class	prob.class-class
Project	runMSE
ProjectMOM	multiMSE
PWhisker	PWhisker
qestMICE	qestMICE
quantile_plot	quantile_plot
R0conv	hconv
Range	Range
read.control.file	iSCAM
read.data.file	iSCAM
read.mcmc	iSCAM
read.par.file	iSCAM
read.projection.file	iSCAM
read.report.file	iSCAM
RealFease	RealFease
Rec-class	Rec-class
Red_snapper	Data-class-objects
Replace	Replace
replic8	replic8
Report	Report
ReqData	ReqData
Required	Required
ResFromRel	ResFromRel
Rockfish	Stock-class-objects
runCOSEWIC	runCOSEWIC
runInMP	runInMP
runMP	runMP
runMSE	runMSE
SampleCpars	SampleCpars
SampleFleetPars	SampleFleetPars
SampleImpPars	SampleImpPars
SampleObsPars	SampleObsPars
SampleStockPars	SampleStockPars
sample_steepness2	sample_steepness2
sdconv	sdconv
select_MP	select_MP
Sense	Sense
setup	setup
show	show-MSEtool
show,Data-method	show-MSEtool
show,Hist-method	show-MSEtool
show,MMSE-method	show-MSEtool
show,MOM-method	show-MSEtool
show,MSE-method	show-MSEtool
show,OM-method	show-MSEtool
show,PMobj-method	show-MSE
show,Rec-method	show-Rec
show-MSEtool	show-MSEtool
SIL	SIL
simCAA	simCAA
simCAL	simCAL
simmov	simmov
simmov2	simmov2
Simulate	runMSE
simulate.Rel	makeRel
SimulatedData	SimulatedData
SimulateMOM	multiMSE
Simulation_1	Data-class-objects
SketchFun	SketchFun
smoothy	smoothy
Snapper	Stock-class-objects
Sole	Stock-class-objects
Splot	Splot
SRalphaconv	hconv
SRbetaconv	hconv
SS2Data	SS2Data
SS2DataMOM	SS2DataMOM
SS2MOM	SS2MOM
SS2OM	SS2MOM
SSBrefplot	SSBrefplot
SSMOM2OM	SS2MOM
Stock-class	Stock-class
Stock-class-objects	Stock-class-objects
StockDescription	StockDescription
STY	PerformanceMetric
Sub	Sub
SubCpars	SubCpars
SubCpars,MOM-method	SubCpars
SubCpars,OM-method	SubCpars
SubOM	SubOM
subsetHerm	Herm-int
summary,Data-method	summary-Data
summary,MMSE-method	summary-MMSE
summary,MSE-method	summary-MSE
TAC	TAC
TACfilter	TACfilter
Targeting_Small_Fish	Fleet-class-objects
Target_All_Fish	Fleet-class-objects
Taxa_Table	Taxa_Table
tdlnorm	trlnorm
TEG	TEG
testOM	OM-class-objects
Thresh_tab	Thresh_tab
tinyErr	tinyErr
tinyErr,OM-method	tinyErr
Toothfish	Stock-class-objects
Tplot	TradePlot
Tplot2	TradePlot
Tplot3	TradePlot
TradePlot	TradePlot
trlnorm	trlnorm
tune_MP	tune_MP
Turing	Turing
TuringMOM	Turing
updateMSE	checkMSE
Uses	Uses
validcpars	validcpars
VOI	VOI
VOI2	VOI2
VOIplot	VOIplot
VPA2OM	Assess2OM
WHAM2OM	WHAM2OM
wormplot	wormplot
writeCSV	writeCSV
XL2Data	XL2Data
XL2Fleet	XL2Fleet
XL2OM	XL2OM
XL2Stock	XL2Stock
Yield	PerformanceMetric
