MGDrivE                 MGDrivE: Mosquito Gene Drive Explorer
MGDrivE-Cube            MGDrivE: Inheritance Cube
MGDrivE-Model           MGDrivE: Model's Mathematical Description
Network                 Network Class Definition
Patch                   Patch Class Definition
aggregateFemales        Aggregate Female Output by Genotype
aggregateOutput         Aggregate Output Over Landscape
basicBatchMigration     Make List of Batch Migration Parameters
calcCos                 Calculate Geodesic Distance - Cosine Method
calcExpKernel           Calculate Exponential Stochastic Matrix
calcGammaKernel         Calculate Gamma Stochastic Matrix
calcHaversine           Calculate Geodesic Distance - Haversine Method
calcHurdleExpKernel     Calculate Zero-inflated Exponential Stochastic
                        Matrix
calcLognormalKernel     Calculate Lognormal Stochastic Matrix
calcOmega               Solve for Omega (additional genotype-specific
                        mortality)
calcQuantiles           Summary Statistics for Stochastic MGDrivE
calcVinEll              Calculate Geodesic Distance - Vincenty
                        Ellipsoid Method
calcVinSph              Calculate Geodesic Distance - Vincenty Sphere
                        Method
calcZeroInflation       Calculates the zero-inflation part of a hurdle
                        exponential kernel.
cube2csv                Export a Cube to .csv
cubeASmidler            Inheritance Cube: Split-Drive for Andrea
                        Smidler
cubeAlleleSail          Inheritance Cube: 3-Piece Allele Sail
cubeCLEAVRMF            Inheritance Cube: CLEAVR - Cleave and Rescue
cubeCLEAVRX             Inheritance Cube: CLEAVR - Cleave and Rescue
cubeClvR                Inheritance Cube: ClvR (Cleave and Rescue)
cubeClvR2               Inheritance Cube: 2-Locus ClvR (Cleave and
                        Rescue)
cubeConfinableHoming    Inheritance Cube: Confinable Homing
cubeConfinableHomingJOHN
                        Inheritance Cube: Confinable Homing Drive, John
cubeConfinableHomingX   Inheritance Cube: Confinable Homing, X-Linked
cubeECHACR              Inheritance Cube: ECHACR
cubeECHACRX             Inheritance Cube: ECHACRX
cubeHoming1RA           Inheritance Cube: Homing Drive with 1
                        Resistance Allele
cubeHomingDrive         Inheritance Cube: CRISPR (Clustered Regularly
                        Interspaced Short Palindromic Repeats) with 2
                        Resistance Alleles and maternal deposition
cubeHomingDriveSM       Inheritance Cube: CRISPR-SM (Clustered
                        Regularly Interspaced Short Palindromic
                        Repeats) with Small-Molecule Induction and 1
                        Resistance Allele and Maternal Deposition
cubeImmunizingReversalMF
                        Inheritance Cube: Immunizing Reversal/Basic
                        Reversal
cubeImmunizingReversalX
                        Inheritance Cube: Immunizing Reversal
cubeKillerRescue        Inheritance Cube: Killer-Rescue System
cubeMEDEA               Inheritance Cube: MEDEA (Maternal Effect
                        Dominant Embryonic Arrest)
cubeMendelian           Inheritance Cube: Mendelian
cubeOneLocusTA          Inheritance Cube: 1 Locus
                        Maternal-Toxin/Zygotic-Antidote System
cubeRIDL                Inheritance Cube: RIDL (Release of Insects with
                        Dominant Lethality)
cubeReciprocalTranslocations
                        Inheritance Cube: Reciprocal Translocation
cubeSplitDrive          Inheritance Cube: Split CRISPR Drive with 2
                        Resistance Alleles and male/female specific
                        homing
cubeSplitDriveX         Inheritance Cube: X-linked Split CRISPR Drive
                        with 2 Resistance Alleles and male/female
                        specific homing
cubeSplitDriveY         Inheritance Cube: Y-linked Split CRISPR Drive
                        with 2 Resistance Alleles
cubeTGD                 Inheritance Cube: tGD
cubeTGDX                Inheritance Cube: tGDX
cubeTwoLocusTA          Inheritance Cube: 2 Locus
                        Maternal-Toxin/Zygotic-Antidote System
cubeWolbachia           Inheritance Cube: Wolbachia
cubeXHomingDeposition   Inheritance Cube: CRISPR (Clustered Regularly
                        Interspaced Short Palindromic Repeats) X-linked
                        with 2 Resistance Allele and Maternal
                        Deposition
cubeXShredderMF         Inheritance Cube: Autosomal X-Shredder
cubeXShredderY          Inheritance Cube: Y-Linked X-Shredder
eraseDirectory          Erase all files in a directory
generateReleaseVector   Make List of Modified Mosquito Releases
kernels                 Kernels Parameters
moveMatAll2             Movement Matrix: All 2
moveMatCascade3         Movement Matrix: Cascade 3
moveMatDiag             Movement Matrix: Diagonal
moveMatDiagOneCity      Movement Matrix: Diagonal One City
moveMatDie              Movement Matrix: Die
moveMatIndependent3     Movement Matrix: Independent 3
moveMatMixedSpil        Movement Matrix: Mixed Spill
moveMatTaleOfTwoCities
                        Movement Matrix: Tale of Two Cities
moveMatTriDiagonal      Movement Matrix: Tri-diagonal
moveMatTriple           Movement Matrix: Triple
multRun_Network         Run Simulation
oneRun_Network          Run Simulation
parameterizeMGDrivE     parameterizeMGDrivE
plotMGDrivEMult         Plot
plotMGDrivESingle       Plot
reset_Network           Reset Network
retrieveOutput          Retrieve Output
setupMGDrivE            Setup MGDrivE
splitOutput             Split Output by Patch
