CSEGriskfigure          Plot Extinction Risk Metrics
CSEGtmufigure           Plot Forecast Uncertainty
MARSS                   Fit a MARSS Model via Maximum-Likelihood
                        Estimation
MARSS-package           Multivariate Autoregressive State-Space Model
                        Estimation
MARSS.dfa               Multivariate Dynamic Factor Analysis
MARSS.marss             Multivariate AR-1 State-space Model
MARSS.marxss            Multivariate AR-1 State-space Model with Inputs
MARSS.vectorized        Vectorized Multivariate AR-1 State-space Model
MARSSFisherI            Observed Fisher Information Matrix at the MLE
MARSSaic                AIC for MARSS Models
MARSSboot               Bootstrap MARSS Parameter Estimates
MARSScv                 MARSScv is a wrapper for MARSS that re-fits the
                        model with cross validated data.
MARSSfit                Generic for fitting MARSS models
MARSSharveyobsFI        Hessian Matrix via the Harvey (1989) Recursion
MARSShatyt              Compute Expected Value of Y, YY, and YX
MARSShessian            Parameter Variance-Covariance Matrix from the
                        Hessian Matrix
MARSShessian.numerical
                        Hessian Matrix via Numerical Approximation
MARSSinfo               MARSS Error Messages and Warnings
MARSSinits              Initial Values for MLE
MARSSinnovationsboot    Bootstrapped Data using Stoffer and Wall's
                        Algorithm
MARSSkem                EM Algorithm function for MARSS models
MARSSkf                 Kalman Filtering and Smoothing
MARSSoptim              Parameter estimation for MARSS models using
                        optim
MARSSparamCIs           Standard Errors, Confidence Intervals and Bias
                        for MARSS Parameters
MARSSresiduals          MARSS Residuals
MARSSresiduals.tT       MARSS Smoothed Residuals
MARSSresiduals.tt       MARSS Contemporaneous Residuals
MARSSresiduals.tt1      MARSS One-Step-Ahead Residuals
MARSSsimulate           Simulate Data from a MARSS Model
SalmonSurvCUI           Salmon Survival Indices
accuracy                Return accuracy metrics
coef.marssMLE           Coefficient function for MARSS MLE objects
datasets                Example Data Sets
fitted.marssMLE         Return fitted values for X(t) and Y(t) in a
                        MARSS model
forecast.marssMLE       forecast function for marssMLE objects
glance                  Return brief summary information on a MARSS fit
harborSeal              Harbor Seal Population Count Data (Log counts)
isleRoyal               Isle Royale Wolf and Moose Data
ldiag                   Return a diagonal list matrix
logLik.marssMLE         logLik method for MARSS MLE objects
loggerhead              Loggerhead Turtle Tracking Data
marssMLE                Class "marssMLE"
marssMODEL              Class "marssMODEL"
marssPredict            Class "marssPredict"
marssResiduals          Class "marssResiduals"
plankton                Plankton Data Sets
plot.marssMLE           Plot MARSS MLE objects
plot.marssPredict       Plot MARSS Forecast and Predict objects
plot.marssResiduals     Plot MARSS marssResiduals objects
population-count-data   Population Data Sets
predict                 predict and forecast MARSS MLE objects
predict.marssMLE        predict and forecast MARSS MLE objects
print.marssMLE          Printing functions for MARSS MLE objects
print.marssMODEL        Printing marssMODEL Objects
print.marssPredict      Printing function for MARSS Predict objects
residuals.marssMLE      Model and state fitted values, residuals, and
                        residual sigma
summary.marssMLE        Summary methods for marssMLE objects
tidy.marssMLE           Return estimated parameters with summary
                        information
toLatex.marssMODEL      Create a LaTeX Version of the Model
tsSmooth.marssMLE       Smoothed and filtered x and y time series
zscore                  z-score a vector or matrix
