AnalyzeOrthoMCL         Main OrthoMCL Analysis
CalculatePrincipalCoordinates
                        Show Principal Components Breakdown
FormatAfterOrtho        Format file from output of OrthoMCL algorithm
                        before use in AnalyzeOrthoMCL
FormatMCLFastas         Format all raw GenBank fastas to single
                        OrthoMCL compatible fasta file
JoinRepSeq              Join Representative Sequences
ManhatGrp               Manhattan Plot of All Taxa
PDGPlot                 Plot of a PDG and Data with Standard Error Bars
PDGvOG                  Number of PDGs vs OGs/PDG
PhyDataError            Phylogenetic Tree with Attached Bar Plot and
                        Standard Error Bars
PrintOGSeqs             Print OG Sequences
QQPlotter               QQPlot
RASTtoGBK               Write RAST files to Genbank formats OrthoMCL
                        Analysis
SurvAppendMatrix        Append Survival Test Outputs
WriteMCL                Print analyzed matrix
after_ortho_format      Formatted output of OrthoMCL.
after_ortho_format_grps
                        Formatted output of OrthoMCL.
joined_mtrx             Final output of join_repset.
joined_mtrx_grps        Final output of join_repset.
mcl_mtrx                Final output of AnalyzeOrthoMCL
mcl_mtrx_grps           Final output of AnalyzeOrthoMCL
pheno_data              Triglyceride (TAG) content of fruit flies
                        dataset.
starv_pheno_data        Starvation rate of fruit flies dataset.
