Type: Package
Package: MADPop
Title: MHC Allele-Based Differencing Between Populations
Version: 1.1.7
Date: 2024-02-26
Authors@R: 
    c(person(given = "Martin",
             family = "Lysy",
             role = c("cre", "aut"),
             email = "mlysy@uwaterloo.ca"),
      person(given = "Peter W.J.",
             family = "Kim",
             role = "aut"),
      person(given = "Terin",
             family = "Robinson",
             role = "ctb"))
Description: Tools for the analysis of population differences
    using the Major Histocompatibility Complex (MHC) genotypes of samples
    having a variable number of alleles (1-4) recorded for each
    individual.  A hierarchical Dirichlet-Multinomial model on the
    genotype counts is used to pool small samples from multiple
    populations for pairwise tests of equality.  Bayesian inference is
    implemented via the 'rstan' package.  Bootstrapped and posterior
    p-values are provided for chi-squared and likelihood ratio tests of
    equal genotype probabilities.
URL: https://github.com/mlysy/MADPop
BugReports: https://github.com/mlysy/MADPop/issues
License: GPL-3
Depends: R (>= 3.4.0), rstan (>= 2.26.0)
Imports: methods, Rcpp (>= 0.12.0), stats, rstantools
Suggests: knitr, rmarkdown, testthat
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        rstan (>= 2.26.0), StanHeaders (>= 2.26.0), RcppParallel (>=
        5.0.1)
VignetteBuilder: knitr
SystemRequirements: GNU make
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
NeedsCompilation: yes
Packaged: 2024-02-26 19:36:43 UTC; mlysy
Author: Martin Lysy [cre, aut],
  Peter W.J. Kim [aut],
  Terin Robinson [ctb]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Repository: CRAN
Date/Publication: 2024-02-27 00:30:02 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 21:20:36 UTC; unix
Archs: MADPop.so.dSYM
