GaudermanLDO-class      An S4 class to represent a 'Gouderman' LDO
                        object, that was generated by the generalized
                        gauderman algorithm.
GaudermanModelEvaluation-class
                        An S4 class to represent the result of the
                        linear mixed effect modeling on a gauderman
                        LDO.
LDO-class               An S4 class to represent a 'LoBrA' Data Object
                        (LDO). It stores multiple time series data for
                        muliple experiements and multiple Components.
                        It allows repeated measurements of a component,
                        irregular sampling, and unequal temporal
                        spacing of the time points.
LDOmodelselection-class
                        An S4 class to represent a model selection
                        result based on an 'LDO'.
LDOscreening-class      An S4 class to represent the screening of
                        metabolites in an 'LDO'.
LoBrA                   LoBrA: A package for modeling longitudinal
                        breath data
as.LOBdataset           Transformation of a single longitudinal data
                        matrix into 'LoBrA' Data Object.
components              'LoBrA' Data Object (LDO) for Example data set
createBGComponents      Simulate background noise peaks
createBGData            Simulate background measurements
createExampleData       Create example data set for 'LoBrA'
createGoudermanData     Create the Gouderman Data Arrangement.
createInformativeComponents
                        Simulate informative peaks
getColor                Get colors for the plotting function.
getGeneralizedGaudermanDataFrame
                        Create Peak Matrices for Generalized
                        'Gauderman' linear mixed effect regression
                        (LMER) Model with parameterized Times
getOptimalSpline        Extract the optimal spline model parameters
                        from the ModelSelection Object.
getPvalue               Testing differences of groups with respect to a
                        specific value and test.
ldo                     'LoBrA' Data Object (LDO) for Example data set
lobraModelSelection     Evaluation of different spline variants.
longDataExample         'LoBrA' Example Data Set
modelGoudermanLongitudinal
                        Fitting the Gouderman LME Model with using
                        Gouderman-Data Arrangement.
plotGaudermanModel      Plotting helper function to plot a single
                        generalized gouderman Model
plotGoudermanLongitudinalResults
                        Plotting the 'Gouderman' LME Model and Results.
plotLDOScreening        Plotting the screening results.
plotTimeSeries          Plotting function for a longitudinal data
                        matrix (Internal Function)
plotmodelSelectionEvaluation
                        Plotting results of Model Evaluation and
                        Selection.
powerSet                Creating the power set of a set.
screening               Screening of background or confounding
                        components
selectComponents        Create a new 'LDO' Object that only contains
                        the selected components.
