R: Isoscape Computation and Inference of Spatial Origins using Mixed Models

# Isoscape Computation and Inference of Spatial Origins using Mixed Models

## Documentation for package ‘IsoriX’ version 0.9.4

- DESCRIPTION file.
- Package NEWS.

## Help Pages

IsoriX-package | Isoscape Computation and Inference of Spatial Origins using Mixed Models
AssignDataAlien | Simulated assignment dataset
AssignDataBat | Assignment datasets for bat species
AssignDataBat2 | Assignment datasets for bat species
AssignDataBat2Rev | Assignment datasets for bat species
AssignDataBatRev | Assignment datasets for bat species
CalibDataAlien | Simulated calibration dataset
CalibDataBat | Calibration datasets for bat species
CalibDataBat2 | Calibration datasets for bat species
CalibDataBat2Rev | Calibration datasets for bat species
CalibDataBatRev | Calibration datasets for bat species
Calibfit | Defunct and deprecated functions
calibfit | Fit the calibration model (or load parameters from calibration done outside IsoriX)
CALIBFIT-class | Class CALIBFIT
CountryBorders | Borders of world CountryBorders
create_aliens | Simulate datasets for calibrations or assignments
downloadfile | Download files and check their binary integrity
ElevRasterDE | The raster of elevation for Germany
GetElev | Defunct and deprecated functions
getelev | Download an elevation raster from internet
getOption_IsoriX | Setting and displaying the options of the package
getprecip | Download rasters of monthly precipitation from internet
GNIPDataALLagg | Hydrogen delta values in precipitation water (aggregated per location)
GNIPDataDE | Hydrogen delta values in precipitation water, Germany
GNIPDataEUagg | Hydrogen delta values in precipitation water (aggregated per location)
isofind | Infer spatial origins
ISOFIND-class | Class ISOFIND
Isofit | Defunct and deprecated functions
isofit | Fit the isoscape models
isomultifit | Fit isoscape models per strata (typically time interval such as months)
isomultiscape | Predicts the average spatial distribution of isotopic values over months, years...
isopalette1 | Colour palettes for plotting
isopalette2 | Colour palettes for plotting
IsoriX | Isoscape Computation and Inference of Spatial Origins using Mixed Models
Isorix | Defunct and deprecated functions
IsoriX-defunct | Defunct and deprecated functions
Isoscape | Defunct and deprecated functions
isoscape | Predicts the spatial distribution of source isotopic values
ISOSCAPE-class | Class ISOSCAPE
Isosim | Defunct and deprecated functions
OceanMask | Mask of world oceans
options | Setting and displaying the options of the package
options_IsoriX | Setting and displaying the options of the package
plot.CALIBFIT | Plotting functions for IsoriX
plot.ISOFIND | Plotting functions for IsoriX
plot.ISOFIT | Plotting functions for IsoriX
plot.ISOSCAPE | Plotting functions for IsoriX
plot.SpatRaster | Plotting functions for IsoriX
plots | Plotting functions for IsoriX
points.CALIBFIT | Plotting functions for IsoriX
PrecipBrickDE | The precipitation monthly amounts for Germany
prepcipitate | Prepare the raster brick containing the precipitation data
prepdata | Defunct and deprecated functions
prepelev | Defunct and deprecated functions
prepiso | Defunct and deprecated functions
prepraster | Prepare the structural raster
prepsources | Filter and aggregate the raw source dataset
print.CALIBFIT | Fit the calibration model (or load parameters from calibration done outside IsoriX)
print.ISOFIND | Infer spatial origins
print.ISOFIT | Fit the isoscape models
print.isoscape | Predicts the spatial distribution of source isotopic values
QueryGNIP | Defunct and deprecated functions
queryGNIP | Defunct and deprecated functions
readRDS | Save and read objects produced by IsoriX using RDS files
readRDS-method | Save and read objects produced by IsoriX using RDS files
readRDS.character | Save and read objects produced by IsoriX using RDS files
RElevate | Defunct and deprecated functions
relevate | Defunct and deprecated functions
saveRDS | Save and read objects produced by IsoriX using RDS files
saveRDS-method | Save and read objects produced by IsoriX using RDS files
saveRDS.CALIBFIT | Save and read objects produced by IsoriX using RDS files
saveRDS.ISOFIND | Save and read objects produced by IsoriX using RDS files
saveRDS.ISOSCAPE | Save and read objects produced by IsoriX using RDS files
saveRDS_IsoriX | Save and read objects produced by IsoriX using RDS files
serialise | Save and read objects produced by IsoriX using RDS files
serialize | Save and read objects produced by IsoriX using RDS files
summary.CALIBFIT | Fit the calibration model (or load parameters from calibration done outside IsoriX)
summary.ISOFIND | Infer spatial origins
summary.ISOFIT | Fit the isoscape models
summary.isoscape | Predicts the spatial distribution of source isotopic values