R: Fragmentation Spectra Analysis (FSA)

# Fragmentation Spectra Analysis (FSA)

## Documentation for package ‘IDSL.FSA’ version 1.2

- DESCRIPTION file

## Help Pages

fragmentation_spectra_annotator | Fragmentation Spectra Annotator
FSA_aggregate | aggregation method for FSA
FSA_annotation_text_repel | FSA annotation text repel
FSA_dir.create | FSA_dir.create
FSA_FSdb_xlsxAnalyzer | FSA FSdb xlsx Analyzer
FSA_loadRdata | FSA loadRdata
FSA_locate_regex | FSA Locate regex
FSA_logRecorder | FSA logRecorder
FSA_message | FSA message
FSA_msp2Cytoscape | FSA Cytoscape Files Generator
FSA_msp_annotator | FSA msp annotator
FSA_plotFSdb2Spectra | plot FSdb to Spectra
FSA_R.aggregate | aggregate function for IDSL.FSA
FSA_SpectraSimilarity_xlsxAnalyzer | FSA SpectraSimilarity xlsx Analyzer
FSA_spectra_marker_generator | FSA Spectra Marker Generator
FSA_uniqueMSPblockTagger | FSA Unique MSP Block Tagger
FSA_uniqueMSPblockTaggerUntargeted | FSA_uniqueMSPblockTaggerUntargeted
FSA_workflow | FSA workflow
FSA_xlsxAnalyzer | FSA xlsx Analyzer
FSdb2msp | Fragmentation Spectra DataBase (FSDB) to MSP
FSdb2PeakXcolSubsetter | FSdb2PeakXcolSubsetter
FSdb2precursorType | Precursor Types from Fragmentation Spectra DataBase (FSDB)
FSdb_file_generator | FSdb file generator
FSdb_subsetter | FSdb subsetter
mgf2msp | MGF to MSP
msp2FSdb | msp to Fragmentation Spectra DataBase (FSDB)
msp2TrainingMatrix | msp to Fragmentation Spectra DataBase (FSDB)
mspPosNegSplitter | MSP Pos/Neg Splitter
plotFSdb2SpectraCore | plot spectra from FSdb core
spectral_entropy_calculator | Spectral Entropy Calculator
spectral_entropy_similarity_score | Spectral Entropy Calculator
spectra_1A1B_mixer | Mixer 1:1 spectra A and B
spectra_integrator | Spectra Integrator
spectra_ion_filter | Spectra Ion Filter
stackedSpectra | Example for a stacked spectra
UFSA_element_sorter | Element Sorter
UFSA_formula_vector_generator | Molecular Formula Vector Generator
UFSA_hill_molecular_formula_printer | Print Hill Molecular Formula
UFSA_ionization_pathway_deconvoluter | Ionization Pathway Deconvoluter
UFSA_precursorType_corrector | UFA Precursor Type Corrector
xlsx2msp | xlsx to MSP