# Generated by roxygen2: do not edit by hand

S3method(c,Hmsc)
S3method(predict,Hmsc)
S3method(print,Hmsc)
S3method(print,HmscRandomLevel)
S3method(setPriors,Hmsc)
S3method(setPriors,HmscRandomLevel)
export(Hmsc)
export(HmscRandomLevel)
export(alignPosterior)
export(biPlot)
export(computeAssociations)
export(computeDataParameters)
export(computePredictedValues)
export(computeSAIR)
export(computeVariancePartitioning)
export(computeWAIC)
export(constructGradient)
export(constructKnots)
export(convertToCodaObject)
export(coralCombine)
export(coralGetRareSpeciesPriors)
export(coralGetXDataExt)
export(coralPlotBeta)
export(coralPredict)
export(coralPreprocess)
export(coralSplitToBatches)
export(coralTrain)
export(createPartition)
export(evaluateModelFit)
export(getPostEstimate)
export(importPosteriorFromHPC)
export(pcomputePredictedValues)
export(plotBeta)
export(plotGamma)
export(plotGradient)
export(plotVariancePartitioning)
export(poolMcmcChains)
export(predictLatentFactor)
export(prepareGradient)
export(sampleMcmc)
export(setPriors)
importFrom(BayesLogit,rpg)
importFrom(FNN,get.knn)
importFrom(FNN,knnx.dist)
importFrom(FNN,knnx.index)
importFrom(MASS,mvrnorm)
importFrom(MCMCpack,MCMCprobit)
importFrom(MCMCpack,riwish)
importFrom(MCMCpack,rwish)
importFrom(Matrix,.sparseDiagonal)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,bdiag)
importFrom(Matrix,solve)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(abind,abind)
importFrom(ape,as.phylo.formula)
importFrom(ape,bind.tree)
importFrom(ape,drop.tip)
importFrom(ape,keep.tip)
importFrom(ape,read.tree)
importFrom(ape,rtree)
importFrom(ape,vcv)
importFrom(ape,vcv.phylo)
importFrom(ape,write.tree)
importFrom(coda,mcmc)
importFrom(coda,mcmc.list)
importFrom(fields,image.plot)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,heat.colors)
importFrom(grDevices,palette)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.new)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(matrixStats,logSumExp)
importFrom(methods,as)
importFrom(methods,is)
importFrom(nnet,multinom)
importFrom(pROC,auc)
importFrom(parallel,clusterApplyLB)
importFrom(parallel,clusterEvalQ)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,mclapply)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(pracma,meshgrid)
importFrom(rlang,duplicate)
importFrom(sp,CRS)
importFrom(sp,`coordinates<-`)
importFrom(sp,`proj4string<-`)
importFrom(sp,bbox)
importFrom(sp,coordinates)
importFrom(sp,is.projected)
importFrom(sp,proj4string)
importFrom(sp,spDists)
importFrom(statmod,gauss.quad)
importFrom(stats,.MFclass)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,cov2cor)
importFrom(stats,dgamma)
importFrom(stats,dist)
importFrom(stats,dnorm)
importFrom(stats,dpois)
importFrom(stats,dt)
importFrom(stats,glm.fit)
importFrom(stats,lm)
importFrom(stats,lm.fit)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,pnorm)
importFrom(stats,poisson)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,rgamma)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,terms)
importFrom(stats,var)
importFrom(truncnorm,rtruncnorm)
importFrom(utils,packageVersion)
