Package: HaploVar
Type: Package
Title: Defining Local Haplotype Variants for Use in Trait Association
        and Trait Prediction Analyses
Version: 0.1.1
Authors@R: c(person("Tessa", "MacNish", email = "tessa.macnish@research.uwa.edu.au", role = c("aut", "cre"), comment = c(ORCID = "0009-0008-8985-7348")), person("Hawlader", "Al-Mamun", role = "ctb"), person("Thomas", "Bergmann", role = "ctb"), person("Mitchell", "Bestry", role = "ctb"), person("Jacob", "Marsh", role = "ctb"), person("David", "Edwards", role = "ctb"))
Description: A local haplotyping tool for use in trait association and trait prediction analyses pipelines.
    'HaploVar' enables users take single nucleotide polymorphisms (SNPs) (in VCF 
    format) and a linkage disequilibrium (LD) matrix, calculate local haplotypes and format the 
    output to be compatible with a wide range of trait association and trait prediction tools. 
    The local haplotypes are calculated from the LD matrix using a clustering algorithm called 
    density-based spatial clustering of applications with noise ('DBSCAN') (Ester et al., 1996) 
    <ISBN: 1577350049>. 
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Imports: dplyr, tidyr, tibble, magrittr, dbscan
Depends: R (>= 4.00)
LazyData: true
LazyDataCompression: xz
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-07-16 07:11:47 UTC; 22724711
Author: Tessa MacNish [aut, cre] (ORCID:
    <https://orcid.org/0009-0008-8985-7348>),
  Hawlader Al-Mamun [ctb],
  Thomas Bergmann [ctb],
  Mitchell Bestry [ctb],
  Jacob Marsh [ctb],
  David Edwards [ctb]
Maintainer: Tessa MacNish <tessa.macnish@research.uwa.edu.au>
Repository: CRAN
Date/Publication: 2025-07-21 08:31:11 UTC
Built: R 4.6.0; ; 2026-04-29 19:25:29 UTC; unix
