Package: Hapi
Type: Package
Title: Inference of Chromosome-Length Haplotypes Using Genomic Data of
        Single Gamete Cells
Version: 0.0.3
Author: Ruidong Li,
	Han Qu,
	Jinfeng Chen,
	Shibo Wang,
	Le Zhang,
	Julong Wei,
	Sergio Pietro Ferrante,
	Mikeal L. Roose,
	Zhenyu Jia
Maintainer: Ruidong Li <rli012@ucr.edu>
Description: Inference of chromosome-length haplotypes using a few haploid 
	gametes of an individual. The gamete genotype data may be generated from various platforms 
	including genotyping arrays and sequencing even with low-coverage. Hapi simply takes 
	genotype data of known hetSNPs in single gamete cells as input and report the high-resolution 
	haplotypes as well as confidence of each phased hetSNPs. The package also includes a module 
	allowing downstream analyses and visualization of identified crossovers in the gametes. 
Depends: R (>= 3.4.0)
License: GPL-3
Encoding: UTF-8
LazyData: false
Imports: HMM, ggplot2
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: SNP, GenomicVariation, Genetics, HiddenMarkovModel,
        SingleCell, Sequencing, Microarray
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-23 04:15:32 UTC; ruidong
Repository: CRAN
Date/Publication: 2018-07-28 15:10:07 UTC
Built: R 4.6.0; ; 2026-04-28 04:43:38 UTC; unix
