Package: HTRX
Type: Package
Title: Haplotype Trend Regression with eXtra Flexibility (HTRX)
Version: 1.2.4
Authors@R: c(
    person("Yaoling", "Yang", email = "yaoling.yang@bristol.ac.uk", role = c("aut", "cre"),
  comment = c(ORCID = "0000-0003-4905-8097")),
    person("Daniel", "Lawson", email = "Dan.Lawson@bristol.ac.uk", role = "aut",
  comment = c(ORCID = "0000-0002-5311-6213")))
Maintainer: Yaoling Yang <yaoling.yang@bristol.ac.uk>
Description: Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends: R (>= 4.0.0)
Imports: fastglm, caret, parallel, methods, stats, glmnet, tune,
        recipes
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-02-09 00:48:07 UTC; yyl19
Author: Yaoling Yang [aut, cre] (<https://orcid.org/0000-0003-4905-8097>),
  Daniel Lawson [aut] (<https://orcid.org/0000-0002-5311-6213>)
Repository: CRAN
Date/Publication: 2024-02-09 08:00:14 UTC
Built: R 4.6.0; ; 2026-04-30 12:24:34 UTC; unix
