CO_DWP                  Associate CO carcasses with appropriate DWP
                        values (by unit and carcass class)
CPcols                  Produce a named vector of standard CP plot
                        colors
CPdistOptions           Produce the options for the distributions in
                        the CP model
DWPCols                 Select the DWP-ok columns from a data table
GenEst                  Generalized estimation of mortality
SEcols                  Produce a named vectory with standard SE plot
                        colors
SEpanel                 Produce a single panel in an SE
                        summary/diagnostic plot
SEsi                    Calculate decayed searcher efficiency
SEsi0                   Calculate decayed searcher efficiency for a
                        single pk
SEsi_left               Calculate conditional probability of
                        observation at a search
SEsi_right              Calculate conditional probability of
                        observation after a series of searches
aicc                    Generic S3 function for summarizing AICc
aicc.cpm                Extract AIC and AICc for a carcass persistence
                        model
aicc.cpmSet             Create the AICc tables for a set of carcass
                        persistence models
aicc.cpmSetSize         Create the AICc tables for a list of sets of
                        searcher efficiency models
aicc.pkm                extract AICc value from pkm object
aicc.pkmSet             Create the AICc tables for a set of searcher
                        efficiency models
aicc.pkmSetSize         Create the AICc tables for a list of sets of
                        searcher efficiency models
aicc.pkmSize            Create the AICc tables for a list of sets of
                        searcher efficiency models
app_content             GenEst Information
app_download_functions
                        GenEst app download funtions
app_msg_functions       GenEst App Messages
app_output_utilities    app utilities for formatting text, tables,
                        figs, etc. for display
app_panels              app panel utility functions
app_server              The GenEst server definition function
app_ui                  Create the GenEst User Interface HTML
app_ui_utilities        HTML parameters
app_utilities           app utilities
app_widgets             Create and manage widgets for data input,
                        function execution, data output
averageSS               Tabulate an average search schedule from a
                        multi-unit SS data table
calcRate                Estimate the number of fatalities in each
                        search interval throughout the monitoring
                        period.
calcSplits              Estimate the number of fatalities by up to two
                        splitting covariates
calcTsplit              Estimate the number of fatalities by time
                        interval
calcg                   Calculate detection probability for given SE
                        and CP parameters and search schedule.
checkComponents         Check for model components
checkDate               Checks whether a vector of data can be
                        interpreted as dates
checkSpecificModelCP    Error check a specific model selection for a CP
                        plot
checkSpecificModelSE    Error check a specific model selection for an
                        SE plot
combinePreds            Combine predictors
combinePredsAcrossModels
                        Combine predictors across models
countCarcs              Count the minimum number of carcasses in the
                        cells
cpLogLik                Calculate the negative log-likelihood of a
                        carcass persistence model
cpm                     Fit cp carcass persistence models
cpmCPCellPlot           Plot cell-specific decay curve for carcass
                        persistence
cpmFail                 Check if a CP model is well-fit
cpmSetFail              Check if cpm models fail
cpmSetFailRemove        Remove failed cpm models from a 'cpmSet' object
cpmSetSizeFail          Check if all of the cpm models fail
cpmSetSizeFailRemove    Remove failed cpm models from a 'cpmSetSize'
                        object
cpmSetSpecCPCellPlot    Plot cell-specific decay curve for carcass
                        persistence
dateCols                Select the date columns from a data table
dateToDay               Calculate day of study from calendar date
defineUnitCol           Auto-parsing to find the name of the unit
                        column ('unitCol')
desc                    Descriptive statistics for a fitted CP model
dlModTabSE              Create the download version of the Searcher
                        Efficiency model table
dwpm                    Fit density-weighted proportion (DWP) models.
estM                    Estimate mortality
estg                    Estimate all carcass-level detection rates and
                        arrival intervals
estgGeneric             Estimate generic g
estgGenericSize         Estimate generic detection probability for
                        multiple carcass classes
expandModelSetCP        Expand a CP model set for plotting
logit                   Compute the logit or anti-logit
ltranspose              Transpose a list of arrays
mock                    A mock example data set
model_utility_functions
                        model utility functions (not exported)
obsCols_SE              Select the columns from a data table that could
                        be SE observations
obsCols_fta             Select the columns from a data table that could
                        be CP First Time Absent observations
obsCols_ltp             Select the columns from a data table that could
                        be CP Last Time Present observations
pkLogLik                Calculate the negative log-likelihood of a
                        searcher efficiency model
pkm                     Fit pk searcher efficiency models.
pkmFail                 Check if a pk model is well-fit
pkmParamPlot            Plot parameter box plots for each cell for
                        either p or k
pkmSECellPlot           Plot cell-specific decay curve for searcher
                        efficiency
pkmSetAllFail           Check if all of the pkm models fail within a
                        given set
pkmSetFail              Check if pkm models fail
pkmSetFailRemove        Remove failed pkm models from a 'pkmSet' object
pkmSetSizeFail          Check if all of the pkm models fail
pkmSetSizeFailRemove    Remove failed pkm models from a 'pkmSetSize'
                        object
pkmSetSpecParamPlot     p or k box plots for an SE model set
pkmSetSpecSECellPlot    Plot cell-specific decay curve for searcher
                        efficiency for a specific model with comparison
                        to the cellwise model
pllogis                 The CDF of the loglogistic distribution
plot.cpm                Plot results of a single CP model
plot.cpmSet             Plot results of a set of CP models
plot.estM               Plot total mortality estimation
plot.gGeneric           Plot results of a single generic ghat
                        estimation
plot.gGenericSize       Plot results of a set of size-based generic
                        ghat estimations
plot.pkm                Plot results of a single pk model
plot.pkmSet             Plot results of a set of SE models
plot.splitFull          Plot summary statistics for splits of mortality
                        estimates
plot.splitSummary       Plot summary statistics for splits of mortality
                        estimates
plotCPCells             Plot the cellwise results of a single model in
                        a set of CP models
plotCPFigure            Plot results of a single CP model in a set
plotCPHeader            The CP plot header
plotSEBoxPlots          p and k box plots for an SE model set
plotSEBoxTemplate       template box plot
plotSECells             Plot the cellwise results of a single model in
                        a set of SE models
plotSEFigure            Plot results of a single SE model in a set
plotSEHeader            The SE plot header
ppersist                Calculate the probability of persistence to
                        detection
predsCols               Select the predictor-ok columns from a data
                        table
prepPredictors          Prepare predictors based on inputs
prepSS                  Create search schedule data into an prepSS
                        object for convenient splits analyses
prettyModTabCP          Create the pretty version of the Carcass
                        Persistence model table
prettyModTabSE          Create the pretty versions of model and summary
                        tables
prettySplitTab          Create the pretty version of the split summary
                        table
print.cpm               Print a 'cpm' model object
print.pkm               Print a 'pkm' model object
qpk                     Quantiles of marginal distributions of \hat{p}
                        and \hat{k}
rcp                     Simulate parameters from a fitted cp model
rdwp                    Simulate parameters from a fitted dwp model
readCSV                 Read in csv files in either format
refMod                  Return the model with the greatest
                        log-likelihood
removeCols              Remove selected columns from column names
rpk                     Simulate parameters from a fitted pk model
runGenEst               Launch the GenEst Application
simpleMplot             Plot a total mortality estimation for a simple
                        situation
sizeCols                Select the potential carcass class columns from
                        a data table
solar_PV                Photovoltaic Example Dataset
solar_powerTower        Power Tower Example Dataset
solar_trough            Trough-based solar thermal power simulated
                        example
summary.estM            Summarize total mortality estimation
summary.gGeneric        Summarize the gGeneric list to a simple table
summary.gGenericSize    Summarize the gGenericSize list to a list of
                        simple tables
summary.splitFull       Summarize results of mortality estimate splits
tidyModelSetCP          Tidy a CP model set
tidyModelSetSE          Tidy an SE model set
transposeSplits         Transpose a 'splitFull' array (preserving
                        attributes)
trimSetSize             Trim a Model-Set-Size Complex to a Single Model
                        Per Size
update_input            Update the inputs when an event occurs
update_output           Update the outputs when an event occurs
update_rv               Update the reactive value list when an event
                        occurs
wind_RP                 Wind Road and Pad (120m) Example
wind_RPbat              Wind Bat-Only Road and Pad (120m) Example
wind_cleared            Wind cleared plot (60m) Search Example
