GLgen-class             Class '"GLgen"'
GLgroup-class           Class '"GLgroup"'
GLmultiList-class       Class '"GLmultiList"'
GLmultiPhiGroup-class   Classes '"GLmultiPhiGroup"'
                        '"GLmultiPhiGroupSingle"' '"GLmultiFGroup"'
                        '"GLmultiFGroupSingle"'
                        '"GLCGMatrixGroupSingle"'
GLmultiVector-class     Classes '"GLmultiVector"' '"GLmultiArray4"'
                        '"GLmultiMatrix"' '"GLmultiNumber"'
gen.branching           Genealogy subset
gen.children            Get id numbers of children
gen.climbPAR            Internal function used by gen.findMRCA
gen.completeness        Completeness
gen.completenessVar     Variance of completeness index
gen.depth               Genealogy depth
gen.f                   Inbreeding coefficient
gen.fCI                 Average inbreeding coefficient confidence
                        interval
gen.find.Min.Distance.MRCA
                        Finds the minimum distances between pairs of
                        individuals given a set of ancestors.
gen.findDistance        Minimum genetic distance between two
                        individuals
gen.findFounders        Find common founder ancestors
gen.findMRCA            Finding most recent common ancestors, MRCAs
gen.founder             Get founder id numbers
gen.gc                  Genetic contribution of ancestors
gen.genealogy           Create object of class GLgen
gen.genout              Create pedigree data
gen.getAncestorsPAR     Internal function used by gen.findMRCA
gen.getFoundersPAR      Internal function used by gen.findFounders
gen.graph               Pedigree graphical tool
gen.half.founder        Get half-founder id numbers
gen.implex              Genealogical implex
gen.implexVar           Variance of genealogical implex
gen.lineages            Create object of class GLgen for maternal or
                        paternal lineages
gen.max                 Maximum number of generations
gen.mean                Mean number of generations
gen.meangendepth        Expected Genealogical Depth
gen.meangendepthVar     Variance of genealogical depth
gen.min                 Minimum number of generations
gen.nochildren          Number of children
gen.noind               Number of individuals
gen.nomen               Number of men
gen.nowomen             Number of women
gen.occ                 Ancestor occurences
gen.parent              Get id numbers of parents
gen.phi                 Kinship coefficient
gen.phiCI               Average kinship confidence interval
gen.phiMean             Average kinship
gen.phiOver             Kinship above threshold
gen.pro                 Get proband id numbers
gen.rec                 Ancestors coverage
gen.sibship             Get id numbers of siblings
gen.simuHaplo           Gene dropping simulations - haplotypes
gen.simuHaplo_IBD_compare
                        Compare proband haplotypes for IBD sharing
gen.simuHaplo_convert   Convert proband simulation results into
                        sequence data given founder haplotypes
gen.simuHaplo_traceback
                        Trace inheritance path for results from gene
                        dropping simulation
gen.simuProb            Gene dropping simulations - Probabilities
gen.simuSample          Gene dropping simulations - Sample
gen.simuSampleFreq      Gene dropping simulations - Frequencies
gen.simuSet             Gene dropping simulations with specified
                        transmission probabilities
genea140                Genealogical information for 140 individuals
                        from the Quebec Reference Sample
geneaJi                 Highly inbred pedigree
pop140                  Population of origin of the 140 Quebec samples
