FSKAuthor               Author Information
FSKDataBackground       Data Background Section
FSKGeneralInformation   General Information Section
FSKMetadata             FSK Metadata Classes
FSKModelCategory        Model Category Information
FSKModelMath            Model Math Section
FSKParameter            Parameter Information
FSKReference            Reference Information
FSKScope                Scope Section
FSK_runner              Startup FSK runner
check_manifest_files    Checks that the files defined in the manifest
                        exist
clean_empty_values      Recursively clean object by removing empty
                        values
clean_json_string       Clean empty values from JSON string
convert_metadata_to_lists
                        Fix the metadat so that it is lists
create_fsk              Creates an FSK model from an existing R script
dataframe_to_list       Converts a dataframe to a list
export_R_model          Functions for exporting the R model of an FSK2R
                        object
export_fsk              Exports an object of FSK class as an .fskx file
export_manifest         Functions for exporting the manifest of an
                        FSK2R object
export_metadata         Function for exporting the metadata of an FSK2R
                        object
export_modelmetadata    Functions for exporting the model metadata of
                        an FSK2R object
export_otherfiles       Export other files
export_packages         Functions for exporting the packages of an
                        FSK2R object
export_readme           Functions for exporting the README of an FSK2R
                        object
export_sbmlModel        Export the model.sbml
export_simulation       Export the sim.sedml
export_visualization    Functions for exporting the visualization
                        script of an FSK2R object
export_workspace        Functions for exporting the workspace of an
                        FSK2R object
extract_script_filenames_from_rdf
                        Extract script filenames from RDF metadata
find_packages           Finds where packages are stored
get_background          Returns the background of an FSK object
get_general_info        Returns the general info of an FSK object
get_modelmath           Returns the model math of an FSK object
get_readme              Readme of an FSK object
get_scope               Returns the scope of an FSK object
get_session_info        Extract session information
get_simulations         Returns a summary of the simulations of an FSK
                        object
import_fsk              Import an FSK model into R
import_fsk_join         Import of FSK with join node
is.FSK2R                Is it an instance of FSK2R?
is_fsk_with_r           Does the object have an R model?
map_FSK_metadata        Map for the contents of the metadata
map_metadata_xml_template
                        Map between the names used in the template and
                        the xml
metadata_list_to_fsk    From read_fsk_metadata_XX to FSK2R format
n_simuls_fsk            Number of simulations in the FSK2R object
read_R_model            Reads the R model in an FSK model
read_fsk_json_metadata
                        Read the metadata.json file
read_fsk_manifest       Read the manifest of an FSK file and convert it
                        to a data.frame
read_fsk_metadata_excel
                        FSK metadata from local Excel file
read_fsk_model          Read the model.sbml
read_fsk_packages       Read the packages.json
read_fsk_rdf_metadata   Read the metadata.rdf
read_fsk_readme         Read the README file
read_fsk_sim            Read the sim.sedml file
read_other_files        Read "other files"
read_visualization      Reads the visualization script in an FSK model
run_all_simulations     Run every simulation in an FSK object
run_simulation          Run one simulation in an FSK object
set_new_simulation      Define a new simulation in an FSK2R object
set_readme              Readme of an FSK object
update_manifest         Updates the manifest file
