AP_assay_simulator      Main function for AP assay simulation
ap_data_sim_PT          Simulated access period experiment Data for a
                        hypothetical PT virus
ap_data_sim_SPT         Simulated access period experiment Data for a
                        hypothetical SPT virus
calculate_epidemic_probability
                        Main function for calculating epidemic
                        probability
estimate_virus_parameters_PT
                        Estimate PT virus parameters using Bayesian
                        inference with rstan
estimate_virus_parameters_SPT
                        Estimate SPT virus parameters using Bayesian
                        inference with rstan
