R: Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates

# Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates

## Documentation for package ‘EcoCleanR’ version 1.0.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

decimal_places | Get Decimal Places of Coordinate Values
distance_calc | Calculate geographic distance and mahalanobis distance to estimate outlier probability of a data point
ecodata | dataset1: Documentation of data file - ecodata.rda
ecodata_cleaned | dataset4: Documentation of data file - ecodata_cleaned.rda
ecodata_corrected | dataset2: Documentation of data file - ecodata_corrected.rda
ecodata_with_outliers | dataset3: Documentation of data file - ecodata_with_outliers.rda
ecodata_x | dataset5: Documentation of data file - ecodata_x.rda
ec_db_merge | Merge the Data sets Extracted from Various datasources.
ec_extract_env_layers | Extract the Environmental data
ec_filter_by_uncertainty | Flag the Occurrences those has Extreme Uncertainty Error Radius
ec_flag_non_east_atlantic | Flag the occurrences those are not in east Atlantic and are inland
ec_flag_non_east_pacific | Flag occurrences those are not in east Pacific and are inland
ec_flag_non_region | Flag Occurrences those are in wrong ocean basins and are inland
ec_flag_non_west_atlantic | Flag Occurrences those are not in west Atlantic and are inland
ec_flag_non_west_pacific | Flag occurrences those are not in east Pacific and are inland
ec_flag_outlier | Flag Outlier Occurrences - using Spatial and Non-spatial Attributes
ec_flag_precision | Flag occurrences those has bad precision
ec_flag_with_locality | Filter records to georeference using GEOLocate
ec_geographic_map | Map view of occurrence data points
ec_geographic_map_w_flag | Map view to visualize data points with outlier probability 0 to 1 on a map view
ec_impute_env_values | Impute Environmental Variables using Mean Values of occurrences within a certain radius
ec_merge_corrected_coordinates | Merge the Update Georeferenced Occurrence Points back to the Main Data File.
ec_plot_distance | Scatter Plot between geo_distance vs maha_distance with geo- and maha- Quantile Threshold to Demonstrate the Outliers outside those threshold.
ec_plot_var_range | Plot cleaned data overlay overall occurrence data to demonstrate accepted ranges of spatial and non-spatial attributes
ec_rm_duplicate | Remove Duplicate Records from the Merged Data
ec_rm_duplicate_occurid | Remove Duplicate Records from the Merged Data based on occurrenceID
ec_trail_zero | Trail Zeros from the Coordinate Values
ec_var_summary | A Summary Table of Final Cleaned Spatial and Environmental Variables
ec_worms_synonym | Check Accepted Synonyms from WoRMs Taxonomy
example_sp_invertebase | dataset6: Documentation of data file - example_sp_invertebase.rda
haversine_kmeans | Calculate Harversine distance