AverageAndRegularize    Average parameter estimates across replicates,
                        and regularize variance estimates
CompareParameters       Get contrasts of estimated parameters
CorrectDropout          Correct for experimental/bioinformatic dropout
                        of labeled RNA.
DeconvolveFractions     Deconvolve multi-feature fractions.
EZDynamics              Generalized dynamical systems modeling
EZMAPlot                Make an MAPlot from EZbakR comparison
EZQC                    Run quality control checks
EZQC.EZbakRArrowData    Run quality control checks
EZQC.EZbakRData         Run quality control checks
EZQC.EZbakRFractions    Run quality control checks
EZSimulate              Simulate NR-seq data for multiple replicates of
                        multiple biological conditions
EZVolcanoPlot           Make a VolcanoPlot from EZbakR comparison
EZbakRArrowData         'EZbakRArrowData' object helper function for
                        users
EZbakRData              'EZbakRData' object helper function for users
EZbakRFractions         'EZbakRFractions' helper function for users
EZbakRKinetics          'EZbakRKinetics' helper function for users
EZget                   Easily get EZbakR table of estimates of
                        interest
EZpcaPlot               Make an MAPlot from EZbakR comparison
EstimateFractions       Estimate fractions of each RNA population.
EstimateIsoformFractions
                        Estimate isoform-specific fraction news (or
                        more generally "fractions").
EstimateKinetics        Estimate kinetic parameters
EstimateMutRates        Estimate mutation rates
ImportIsoformQuant      Import transcript isoform quantification into
                        EZbakRData object
NormalizeForDropout     Normalize for experimental/bioinformatic
                        dropout of labeled RNA.
SimpleSim               Simple simulation function
SimulateDynamics        Simulation of generalized dynamical system
                        model.
SimulateIsoforms        Simulation of transcript isoform kinetic
                        parameters.
SimulateMultiCondition
                        Simulate NR-seq data for multiple replicates of
                        multiple biological conditions
SimulateMultiLabel      Simulate one replicate of multi-label NR-seq
                        data
SimulateOneRep          Simulate a single replicate of NR-seq data
VectSimulateMultiLabel
                        Vectorized simulation of one replicate of
                        multi-label NR-seq data
VisualizeDropout        Make plots to visually assess dropout trends
create_fraction_design
                        Generate a 'fraction_design' table for
                        'EstimateFractions'.
example_cB              Example cB table
example_metadf          Example metadf
get_normalized_read_counts
                        Get normalized read counts from either a cB
                        table or 'EZbakRFractions' object.
new_EZbakRArrowData     'EZbakRArrowData' object constructor for
                        internal use
new_EZbakRData          'EZbakRDataobject' constructor for internal use
new_EZbakRFractions     'EZbakRFractions' object constructor
new_EZbakRKinetics      'EZbakRKinetics' object constructor
ode_models              Example ODE model graphs and formulas
print.EZbakRArrowData   Print method for 'EZbakRArrowData' objects
print.EZbakRData        Print method for 'EZbakRData' objects
standard_fraction_design
                        Standard 'fraction_design' table for
                        'EstimateFractions'
tilac_fraction_design   TILAC 'fraction_design' table for
                        'EstimateFractions'
validate_EZbakRArrowData
                        'EZbakRArrowData' EZbakRArrowData validator
validate_EZbakRData     'EZbakRDataobject' validator
validate_EZbakRFractions
                        'EZbakRFractions' object validator
validate_EZbakRKinetics
                        'EZbakRKinetics' object validator
