# Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data

## Documentation for package ‘EEM’ version 1.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

EEM-package | EEM: A package for reading and preprocessing fluorescence excitation-emission matrix
applejuice | Apple juice
commonizeEEM | Smooth out the different dimensions of EEM data
cutEEM | Cut portions of EEM
cutEEM.EEM | Cut portions of EEM
cutEEM.EEMweight | Cut portions of EEM
delScattering | Delete scattering rays
delScattering2 | Delete scattering rays
drawEEM | Draw contour for EEM data
drawEEM.data.frame | Draw contour for EEM data
drawEEM.EEM | Draw contour for EEM data
drawEEM.EEMweight | Draw contour for EEM data
drawEEM.matrix | Draw contour for EEM data
drawEEM.numeric | Draw contour for EEM data
drawEEMgg | Draw contour for EEM data using ggplot2
drawEEMgg.EEM | Draw contour for EEM data using ggplot2
drawEEMgg.EEMweight | Draw contour for EEM data using ggplot2
drawEEMgg_internal | Draw contour for EEM data using ggplot2
EEM | EEM: A package for reading and preprocessing fluorescence excitation-emission matrix
EEM-misc | Internal functions for EEM package
extract | Extract values from other models
findLocalMax | Find local maximum peaks
findLocalMax.EEM | Find local maximum peaks
findLocalMax.matrix | Find local maximum peaks
findLocalMax.numeric | Find local maximum peaks
fold | Fold EEM matrix into a list
fold.data.frame | Fold EEM matrix into a list
fold.matrix | Fold EEM matrix into a list
fold.numeric | Fold EEM matrix into a list
generateColor | Internal functions for EEM package
generatePoint | Internal functions for EEM package
getEM | Internal functions for EEM package
getEX | Internal functions for EEM package
getLoading | Extract values from other models
getReg | Extract values from other models
gluten | Gluten
normalize | Normalize data
plotLoading | Plot loadings for EEM data
plotReg | Plot regression coefficients for EEM data
plotScore | Plot score for prcomp result
plotScorem | Plot score matrix for prcomp result based on group
prcompname | Create name for prcomp result
print.EEM | Print EEM
readEEM | Read raw files and return a list
summary.EEM | SummarizeEEM EEM list
unfold | Unfold EEM list into a matrix
[.EEM | Subset EEM list