AcceptableMove          Check if move is acceptable.
BinoHyperMove           Makes a binomial hyperparameter move.
BinoHyperRatio          Calculates the MH ratio of the binomial prior.
CalculateChanges        Function to calculate the number of differences
                        between adjaccent network segments.
CalculateLikelihoodRatio
                        Calculates the ratio of two likelihoods in a
                        structure move.
CalculatePriorRatio     Calculates the network prior ratio.
CollectNetworkInfo      Collects all the network information in one
                        list.
EDISON.run              Wrapper function for starting an MCMC
                        simulation
ExpHyperMove            Makes an exponential hyperparameter move.
ExpHyperRatioTarget     Calculates the ratio of an exponential
                        hyperparameter move.
HyperParms              Sets up initial values of hyperparameters.
HyperparameterMove      Make a hyperparameter move.
NetworkProbBino         Calculates the prior probability of the network
                        segments under the binomial prior.
NetworkProbExp          Calculates the prior probability of the network
                        using the exponential prior.
NetworkRatioBino        Calculates the ratio of binomial prior
                        probabilites.
NetworkRatioExp         Calculates the ratio of exponential network
                        prior probabilities.
PriorRatioPoisson       Calculate network prior ratio with Poisson
                        prior.
ProposeDiscrete         Propose a new discrete value.
addProposalNetworkInfo
                        Add the proposed new network to the new.nets
                        list.
bp.computeAlpha         Computes the acceptance ratio of two
                        changepoint configurations.
buildXY                 Builds response Y and predictor X.
calculateCPPGlobal      Calculated the global changepoint
                        probabilities.
calculateCPProbabilities
                        Calculate the changepoint probabilities.
calculateEdgeProbabilities
                        Calculate the edge probabilities.
calculateEdgeProbabilitiesSegs
                        Calculate edge probabilities for fixed
                        segments.
calculateEdgeProbabilitiesTimePoints
                        Calculate the edge posterior probabilities for
                        each timepoint.
computePx               Compute projection matrix.
computeRho4             Calculate proposal frequencies for changepoint
                        moves.
convert_nets            Convert internal representation of networks.
cp.birth                Make changepoint birth move.
cp.death                Make changepoint death move.
cp.shift                Makes a changepoint shift move.
defaultOptions          Set the default options for the MCMC
                        simulation.
dinvgamma               Calculate inverse gamma distribution.
fix_eigenvalues         Modify network to ensure stationarity.
generateNetwork         Generate a random network.
init                    Initialise the MCMC simulation.
main                    Main function of the MCMC simulation.
make_structure_move     Makes a structure move.
output                  Collects and saves output.
phase.update            Make a network structure or hyperparameter
                        move.
proposalTuning          Tune the proposal width for betas.
proposeContinuous       Propose a new real hyperparameter value.
psrf                    Calculates the potential scale reduction
                        factor.
psrf_check              Check the potential scale reduction factors for
                        all parameters (edges).
psrf_check_hyper        Checks the potential scale reduction factor for
                        the hyperparameters.
readDataTS              Read target data.
rinvgamma               Samples from the inverse gamma distribution.
runDBN                  Setup and run the MCMC simulation.
sampleBinit             Sample initial regression coefficients.
sampleBxy               Sample regression coefficients.
sampleDelta2            Sample delta squared.
sampleK                 Sample initial number of changepoints.
sampleParms             Sample initial parameters for the MCMC
                        simulation.
sampleSig2              Sample initial sigma squared.
simulateNetwork         Generate network and simulate data.
updateSigMulti          Update sigma squared variances.
updateSigSolo           Sample new values for sigma squared.
