AdjustPvalue            Determine p-values based on permutation test
                        results
BlankPlot               Generate a blank plot window
BuildLimmaLM            Fit linear models to time-course expression
                        patterns using the limma package
BuildModMembership      Calculate module membership (kME) for all genes
                        in a time-course data set
DiPALM-package          DiPALM - Differential Pattern Analysis via
                        Linear Modeling
PlotTCs                 Plot multiple time-course expression patterns
                        for one gene
PlotTCsRibbon           Plot multiple averaged time-course expression
                        patterns for a group of genes
col_format_sub          Substitute values in for the time, treatment,
                        and replicate portion of a column format.
dipalm                  Run a single instance of the DiPALM pipeline
                        with replicates permuted.
exampleData             Example Data: Data for use with the DiPALM
                        vignette
ggPlotMultiDensities    Plot multiple density distributions
joinOutputs             Joins outputs from multiple invocations of the
                        function 'dipalm'.
main                    Runs the full DiPALM pipeline with replicate
                        permutation in parallel.
make_TCs                Break a data matrix into time courses separated
                        by treatment and replicate.
msub                    Regex substitution applied to a vector or list.
open_log                Open a log
re_esc                  Format a string as a regular expression
                        literal.
sampleReplicates        Samples replicates from a dataset without
                        replacement.
smallTestData           Small test data for the DiPALM pipeline.
testData                Test Data: Data for function testing
