R: Statistical Inference for Mixed Traces of DNA (Lite-Version)

# Statistical Inference for Mixed Traces of DNA (Lite-Version)

## Documentation for package ‘DNAmixturesLite’ version 0.0-1

- DESCRIPTION file

## Help Pages

DNAmixturesLite-package | Statistical Inference for Mixed Samples of DNA (Lite-Version)
boxplot.DNAmixture | Plot simulated peak heights for multiple DNA mixtures.
buildMixtureDomains | Create RHugin domains for computation.
DNAmixture | Create a DNA mixture model
DNAmixtureData | Create a data set for a DNA mixture model
DNAmixtures | Statistical Inference for Mixed Samples of DNA (Lite-Version)
DNAmixturesLite | Statistical Inference for Mixed Samples of DNA (Lite-Version)
dyes | Dyes for a DNA mixture
dyes<- | Dyes for a DNA mixture
getShapes | Shape parameters for a mixture with known contributors only
logL | Loglikelihood function for DNA mixture analysis.
logL.K | Loglikelihood function for DNA mixture analysis.
logL.UK | Loglikelihood function for DNA mixture analysis.
logLpres.K | Loglikelihood function for DNA mixture analysis.
logLpres.UK | Loglikelihood function for DNA mixture analysis.
map.genotypes | Maximum posterior genotypes of unknown contributors
MC15 | The MC15 DNA mixture
MC18 | The MC18 DNA mixture
mixML | Maximisation of the likelihood for one or more mixed traces of DNA
mixpar | Parameters for DNA mixture models
NGM | NGM allele frequencies
NGMDyes | Dyes used for NGM
plot.DNAmixture | Plot a DNA mixture model
plot.prequential.score | Calculate prequential scores
predict.DNAmixture | Various probabilities in a fitted DNA mixture model
prequential.score | Calculate prequential scores
print.DNAmixture | Create a DNA mixture model
print.mixpar | Parameters for DNA mixture models
print.summary.map.genotypes | Summary of best genotypes
print.summary.mixVarEst | Estimated asymptotic variance matrix for MLE
ProfilerDyes | Dyes used for Profiler plus
qqpeak | Quantile-Quantile plot for assessing the distribution of observed peak heights.
removePeakInfo | Include or exclude peak information in the model
rPeakHeight | Simulate peak heights from a DNA mixture model.
setCPT | Set conditional probability tables for all auxiliary variables
setCPT.D | Set tables for auxiliary variables 'D'
setCPT.O | Set tables for auxiliary variables 'O'.
setCPT.Q | Set tables for auxiliary variables 'Q'
setPeakInfo | Include or exclude peak information in the model
SGMplusDyes | Dyes used for SGMplus
summary.map.genotypes | Summary of best genotypes
summary.mixVarEst | Estimated asymptotic variance matrix for MLE
UKCaucasian | Allele frequencies for UK Caucasians
USCaucasian | The data base of allele frequencies for 302 US Caucasian profiles.
varEst | Estimated asymptotic variance matrix for MLE