R: Extract Drugs from Differential Expression Data from LINCS Database

# Extract Drugs from Differential Expression Data from LINCS Database

## Documentation for package ‘DFD’ version 0.4.0

- DESCRIPTION file

## Help Pages

convert_id | Convert Gene Symbols to ENTREZ IDs
filter_drugs | Re-rank drugs based on the number of targets
get_drugs | Get Drugs associated with the differential expression profile
get_pert_by_type | Filter the drug based on the tested cell-line
parse_perts | Parse the perturbagens to find out their frequency of occurrence.
plot_activities | Visualise the number of perturbagens and the top activities
prepare_ids | Prepare IDs for CMAP Search
read_id | Read Gene Symbols from CSV file into up and down regulated lists
run_pipeline | Run the main pipeline for getting drugs from differentail expression profile