computeObsWSAF          Compute observed WSAF
extractCoverageFromTxt
                        Extract read counts from plain text file
extractCoverageFromVcf
                        Extract VCF information
extractPLAF             Extract PLAF
haplotypePainter        Painting haplotype according the reference
                        panel
histWSAF                WSAF histogram
plotAltVsRef            Plot coverage
plotObsExpWSAF          Plot WSAF
plotProportions         Plot proportions
plotWSAFvsPLAF          Plot WSAF vs PLAF
