Package: CytoSimplex
Type: Package
Title: Simplex Visualization of Cell Fate Similarity in Single-Cell
        Data
Version: 0.2.0
Date: 2025-04-22
Authors@R: c(
    person(given = 'Yichen', family = 'Wang', email = 'wayichen@umich.edu', 
           role = c('aut', 'cre'), comment = c(ORCID = "0000-0003-4347-5199")),
    person(given = 'Jialin', family = 'Liu', email = 'alanliu@umich.edu', 
           role = c('aut'), comment = c(ORCID = "0000-0002-9984-7695")),
    person(given = 'Joshua', family = 'Welch', email = 'welchjd@umich.edu', 
           role = c('cph'))
  )
Maintainer: Yichen Wang <wayichen@umich.edu>
Description: Create simplex plots to visualize the similarity between 
    single-cells and selected clusters in a 1-/2-/3-simplex space.
    Velocity information can be added as an additional layer. 
    See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
URL: https://welch-lab.github.io/CytoSimplex/,
        https://github.com/welch-lab/CytoSimplex
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: stats, methods, grDevices, R (>= 3.6)
LinkingTo: Rcpp, RcppArmadillo
biocViews:
Imports: cli, ggplot2, Matrix, plot3D, plotly, RColorBrewer, Rcpp,
        rlang, viridis
Suggests: hdf5r, knitr, magick, patchwork, rmarkdown, Seurat,
        SeuratObject, SingleCellExperiment, SummarizedExperiment,
        testthat (>= 3.0.0)
RoxygenNote: 7.3.2
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2025-04-23 14:07:08 UTC; wangych
Author: Yichen Wang [aut, cre] (<https://orcid.org/0000-0003-4347-5199>),
  Jialin Liu [aut] (<https://orcid.org/0000-0002-9984-7695>),
  Joshua Welch [cph]
Repository: CRAN
Date/Publication: 2025-04-23 14:30:02 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-30 09:45:27 UTC; unix
Archs: CytoSimplex.so.dSYM
