ChemoSpec-package       Exploratory Chemometrics for Spectroscopy
Spectra                 Spectra Objects
SrE.IR                  IR and NMR Spectra of Serenoa repens (Saw
                        Palmetto) Oil Extracts and Reference Oils
aovPCAloadings          Plot aovPCAscores Loadings of a Spectra Object
aovPCAscores            Plot ANOVA-PCA Scores from a Spectra Object
aov_pcaSpectra          ANOVA-PCA Analysis of Spectra Data
averageReplicates       Average Replicates in a Spectra Object
baselineSpectra         Baseline Correction of a Spectra Object
binSpectra              Bin or Bucket a Spectra Object
c_pcaSpectra            Classical PCA of Spectra Objects
check4Gaps              Check for Discontinuities (Gaps) in a Vector &
                        Optionally Make a Plot
chkGraphicsOpt          Check the Graphics Output Option/Mode
chkSpectra              Verify the Integrity of a Spectra or Spectra2D
                        Object
clupaSpectra            Hierarchical Cluster-Based Peak Alignment on a
                        Spectra Object
colorSymbol             Color and Symbols in ChemoSpec and ChemoSpec2D
conColScheme            Change the Color Scheme of a Spectra or
                        Spectra2D Object
cv_pcaSpectra           Cross-Validation of Classical PCA Results for a
                        Spectra Object
evalClusters            Evaluate or Compare the Quality of Clusters
                        Quantitatively
files2SpectraObject     Import Data into a Spectra Object
hcaScores               HCA on PCA/MIA/PARAFAC scores from a Spectra or
                        Spectra2D Object
hcaSpectra              Plot HCA Results of a Spectra Object
hmapSpectra             Seriated Heat Map for a Spectra Object
hypTestScores           Conduct MANOVA using PCA Scores and Factors in
                        a Spectra Object
irlba_pcaSpectra        IRLBA PCA of Spectra Objects
mclust3dSpectra         mclust Analysis of a Spectra Object in 3D
mclustSpectra           mclust Analysis of a Spectra Object PCA Results
metMUD1                 Made Up NMR Data Sets
normSpectra             Normalize a Spectra Object
pcaDiag                 Outlier Diagnostic Plots for PCA of a Spectra
                        Object
plot2Loadings           Plot PCA Loadings from a Spectra Object Against
                        Each Other
plot3dScores            3D PCA Score Plot for a Spectra Object
plotLoadings            Plot PCA Loadings for a Spectra Object
plotScores              Plot Scores from PCA, MIA or PARAFAC Analysis
                        of a Spectra or Spectra2D Object
plotScree               Scree Plots from PCA or MIA Analysis of a
                        Spectra or Spectra2D Object
plotSpectra             Plot Spectra Object
plotSpectraDist         Plot the Distance Between Spectra and a
                        Reference Spectrum in a Spectra Object
plotSpectraJS           Plot a Spectra Object Interactively
r_pcaSpectra            Robust PCA of a Spectra Object
removeFreq              Remove Frequencies from a Spectra or Spectra2D
                        Object
removeGroup             Remove Groups from a Spectra or Spectra2D
                        Object
removeSample            Remove Samples from a Spectra or Spectra2D
                        Object
reviewAllSpectra        Review All the Spectra in a Spectra Object
rowDist                 Compute Distance Between Rows of a Matrix
sPlotSpectra            s-Plot of Spectra Data (Post PCA)
s_pcaSpectra            Sparse PCA of Spectra Objects
sampleDist              Compute the Distances Between Samples in a
                        Spectra or Spectra2D Object
sgfSpectra              Apply Savitzky-Golay filters to a Spectra
                        object
splitSpectraGroups      Create New Groups from an Existing Spectra
                        Object
sumGroups               Summarize the Group Membership of a Spectra or
                        Spectra2D Object
sumSpectra              Summarize a Spectra or Spectra2D Object
surveySpectra           Plot Measures of Central Tendency and Spread
                        for a Spectra Object
updateGroups            Update Group Names in a Spectra or Spectra2D
                        Object
