# Generated by roxygen2: do not edit by hand

S3method(.DollarNames,Spectra)
export(.chkReqPkgs)
export(aovPCAloadings)
export(aovPCAscores)
export(aov_pcaSpectra)
export(averageReplicates)
export(baselineSpectra)
export(binSpectra)
export(c_pcaSpectra)
export(check4Gaps)
export(chkGraphicsOpt)
export(chkSpectra)
export(clupaSpectra)
export(cv_pcaSpectra)
export(evalClusters)
export(files2SpectraObject)
export(hcaScores)
export(hcaSpectra)
export(hmapSpectra)
export(hypTestScores)
export(irlba_pcaSpectra)
export(matrix2SpectraObject)
export(mclust3dSpectra)
export(mclustSpectra)
export(normSpectra)
export(pcaDiag)
export(plot2Loadings)
export(plot3dScores)
export(plotLoadings)
export(plotScores)
export(plotScree)
export(plotSpectra)
export(plotSpectraDist)
export(plotSpectraJS)
export(r_pcaSpectra)
export(removeFreq)
export(removeGroup)
export(removeSample)
export(reviewAllSpectra)
export(rowDist)
export(sPlotSpectra)
export(s_pcaSpectra)
export(sampleDist)
export(sgfSpectra)
export(splitSpectraGroups)
export(sumGroups)
export(sumSpectra)
export(surveySpectra)
export(surveySpectra2)
importFrom(ChemoSpecUtils,.addEllipseInfo)
importFrom(ChemoSpecUtils,.addLegend)
importFrom(ChemoSpecUtils,.chkArgs)
importFrom(ChemoSpecUtils,.chkReqGraphicsPkgs)
importFrom(ChemoSpecUtils,.colLeaf)
importFrom(ChemoSpecUtils,.computeEllipses)
importFrom(ChemoSpecUtils,.getExtremeCoords)
importFrom(ChemoSpecUtils,.getVarExplained)
importFrom(ChemoSpecUtils,.ggAddLegend)
importFrom(ChemoSpecUtils,.ggAnnotate)
importFrom(ChemoSpecUtils,.ggRepel)
importFrom(ChemoSpecUtils,.groupNcolor)
importFrom(ChemoSpecUtils,.labelExtremes)
importFrom(ChemoSpecUtils,.plotHCA)
importFrom(ChemoSpecUtils,.prepLegendCoords)
importFrom(ChemoSpecUtils,.shrinkLeaf)
importFrom(ChemoSpecUtils,check4Gaps)
importFrom(ChemoSpecUtils,chkGraphicsOpt)
importFrom(ChemoSpecUtils,chkSpectra)
importFrom(ChemoSpecUtils,hcaScores)
importFrom(ChemoSpecUtils,plotScores)
importFrom(ChemoSpecUtils,plotScree)
importFrom(ChemoSpecUtils,removeFreq)
importFrom(ChemoSpecUtils,removeGroup)
importFrom(ChemoSpecUtils,removeSample)
importFrom(ChemoSpecUtils,rowDist)
importFrom(ChemoSpecUtils,sampleDist)
importFrom(ChemoSpecUtils,sumGroups)
importFrom(ChemoSpecUtils,sumSpectra)
importFrom(ggplot2,.pt)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(grDevices,devAskNewPage)
importFrom(graphics,abline)
importFrom(graphics,boxplot)
importFrom(graphics,grid)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(patchwork,plot_layout)
importFrom(plotly,add_annotations)
importFrom(plotly,add_markers)
importFrom(plotly,add_trace)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(readJDX,readJDX)
importFrom(reshape2,melt)
importFrom(stats,aov)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,fivenum)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,manova)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,qchisq)
importFrom(stats,qf)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,relevel)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(tools,file_path_sans_ext)
importFrom(utils,.DollarNames)
importFrom(utils,browseURL)
importFrom(utils,combn)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
