R: CRISPR-Based Salmonella Enterica Serotype Analyzer

# CRISPR-Based Salmonella Enterica Serotype Analyzer

## Documentation for package ‘CSESA’ version 1.2.0

- DESCRIPTION file

## Help Pages

CSESA | CSESA (CRISPR-based Salmonella enterica Serotype Analyzer).
FindSerotype | Find the serotype based on the analysis of the new spacers.
GetAllNewSpacers | Get the new spacers from the molecular sequence and its reverse complement.
GetNewSpacer | Get the new spacer from the molecular sequence.
GetNewSpacerCode | Get the new spacer from the molecular sequence and map it to the code.
GetReverseComplement | Return the reverse complement of the sequence.
GetStr | Get the information string from the CSESA s3 object.
PCR | Get the CSESA obeject through the two sequence.
ReadInFile | Read the three types of input file.
WGS | Find the serotype based on the analysis of the new spacers.