R: Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations

# Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations

## Documentation for package ‘CPBayes’ version 1.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

analytic_locFDR_BF_cor | Analytic calculation of the local FDR & Bayes factor for correlated summary statistics.
analytic_locFDR_BF_uncor | Analytic calculation of the local FDR & Bayes factor for uncorrelated summary statistics.
CPBayes | CPBayes: An R-package implemeting a Bayesian meta analysis method for studying cross-phenotype genetic associations.
cpbayes_cor | Run correlated version of CPBayes.
cpbayes_uncor | Run uncorrelated version of CPBayes.
estimate_corln | Estimate correlation structure of beta-hat vector for multiple overlapping case-control studies using sample-overlap matrices.
ExampleDataCor | An example data for correlated summary statistics.
ExampleDataUncor | An example data for uncorrelated summary statistics.
forest_cpbayes | Forest plot presenting pleiotropy result obtained by CPBayes.
post_summaries | Post summary of the MCMC data generated by the uncorrelated or correlated version of CPBayes.
SampleOverlapMatrix | An example data of sample-overlap matrices.