R: CNV-Profile Regression for Copy Number Variants Association Analysis with Penalized Regression

# CNV-Profile Regression for Copy Number Variants Association Analysis with Penalized Regression

## Documentation for package ‘CNVreg’ version 1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

CNV | Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
CNVCOVY | Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
Cov | Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
cvfit_WTSMTH | Penalized Regression with Lasso and Weighted Fusion Penalties with Cross-Validation
fit_WTSMTH | Penalized Regression with Lasso and Weighted Fusion Penalties with Given Parameters
prep | Prepare Data for Analysis
Y_BT | Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
Y_QT | Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.