CLONETv2-package        CLONETv2
adm_table_toy           Toy example of admixture table.
allele_specific_cna_table_toy
                        Toy example of allele specific table of somatic
                        copy number.
bt_toy                  Toy example of beta table.
check_ploidy_and_admixture
                        Function to compute ploidy from a beta table.
compute_allele_specific_scna_table
                        Function to compute allele specific somatic
                        copy number
compute_beta_table      Function to compute beta table
compute_dna_admixture   Function to compute DNA admixture of a tumor
                        sample from the associatd beta table and ploidy
                        table
compute_ploidy          Function to compute ploidy from a beta table.
compute_scna_clonality_table
                        Function to compute clonality of somatic copy
                        number data
compute_snv_clonality   Function to compute clonality of SNVs
error_table             Beta estimation error.
pileup_normal_toy       Toy example of normal pileup data.
pileup_tumor_toy        Toy example of tumor pileup data.
pl_table_toy            Toy example of ploidy table.
scna_clonality_table_toy
                        Toy example of clonality table of somatic copy
                        number.
seg_tb_toy              Toy example of segmetd data.
snv_clonality_table_toy
                        Toy example of snv clonality table.
snv_reads_toy           Toy example of snv data.
