R: Copula-Based Joint Analysis of Multiple Phenotypes

# Copula-Based Joint Analysis of Multiple Phenotypes

## Documentation for package ‘CJAMP’ version 0.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

cjamp | C-JAMP: Copula-based joint analysis of multiple phenotypes.
cjamp_loop | C-JAMP: Copula-based joint analysis of multiple phenotypes.
compute_expl_var | Phenotypic variance explained by genetic variants.
compute_MAF | Compute minor allele frequency of genetic variants.
generate_clayton_copula | Generate data from the Clayton copula.
generate_doubleton_data | Functions to generate genetic data.
generate_genodata | Functions to generate genetic data.
generate_phenodata | Functions to generate phenotype data.
generate_phenodata_1 | Functions to generate phenotype data.
generate_phenodata_1_simple | Functions to generate phenotype data.
generate_phenodata_2_bvn | Functions to generate phenotype data.
generate_phenodata_2_copula | Functions to generate phenotype data.
generate_singleton_data | Functions to generate genetic data.
get_estimates_naive | Naive estimates of the copula and marginal parameters.
lrt | Compute likelihood ratio tests.
lrt_copula | Compute likelihood ratio tests.
lrt_param | Compute likelihood ratio tests.
minusloglik | Minus log-likelihood of copula models.
summary.cjamp | Summary function.