BoSSA-package           A Bunch of Structure and Sequence Analysis
circular_tree           Plot an inside-out circular tree
plot.pplace             Plot a pplace or jplace object
pplace                  A placement object as obtained with the
                        read_sqlite function
pplace_to_matrix        Pplace to contingency matrix
pplace_to_table         Merge the multiclass and the placement table of
                        pplace object
pplace_to_taxonomy      Convert a pplace object to a taxonomy table
print.pplace            Compact display of pplace and jplace objects
print.protdb            Compact display of protdb object
read_jplace             Read a jplace file
read_protdb             Read Protein Data Bank (PDB) file
read_sqlite             Read a pplacer/guppy sqlite file
refpkg                  Summary data and plots for reference packages
sub_pplace              Subsets a pplace object
write_jplace            Write a jplace or pplace object to the disk
