ALK                     ALK (Age Length Key)
ALKf                    Estimation of ALK
BioIndex                Main function to perform BioIndex analysis
IUT                     Interception Union Tets
LFD                     Length Frequency Distribution (LFD) Estimation
                        and Plotting
LW                      LW (Length-Weight relationship)
LWf                     Estimation of LW relationship
Lquant                  Estimation of L50 and L95
MEDITS.distance         Estimation of haul distance
MEDITS.to.dd            Conversion of MEDITS format coordinates in
                        decimal degrees format
MIW                     Estimation of Mean Individual Weight (MIW) time
                        series
TA                      TA table example
TA_cols                 TA table headings
TB                      TB table example
TB_cols                 TB table headings
TC                      TC table example
TC_cols                 TC table headings
aggregate_gsas          Aggregate MEDITS data across multiple GSAs
bubble_plot_by_haul_indexes
                        Bubble plot of abundance and biomass indices by
                        haul
bubbleplot_RS_by_hauls
                        Bubbleplot of abundance indices for recruits
                        and spawners
centroidi               centroidi
cgpmgrid                cgpmgrid
check_date_haul         Check date haul (RoME)
check_dictionary        Check dictionary (RoME)
check_hauls_TBTA        Check hauls TB TA (RoME)
check_numeric_range     Check numeric range (RoME)
continent               continent
convert_coordinates     MEDITS coordinates in decimal degrees
dd.distance             Estimate hauls distances (decimal degrees)
dd.to.MEDITS            Conversion of decimal degrees coordinates in
                        MEDITS format
hauls_position          Plot of hauls time series
index_on_grid           Generating maps of indexes
index_recr              Estimation of abundance indices for recruits
index_spawn             Estimation of abundance indices for spawners
                        (females)
index_ts_F              Estimation of abundance indices for females
index_ts_M              Estimation of abundance indices for males
indices_ts              Estimation of abundance and biomass indices
med_bathy               Mediterranean and Black Sea bathymetry
                        (0â€“1000 m, bathy object)
merge_TATB              Merge TA and TB tables (haul-level catches)
merge_TATBTC            Merge TAâ€“TB and TAâ€“TC tables (MEDITS
                        protocol)
merge_TATC              Merge TA and TC tables (haul-level
                        lengthâ€“frequency data)
overlayGrid             Overlay mTATB and mTATC on GFCM spatial grid
quant                   Quantile estimation
run_BioIndex_app        launches the embedded Shiny application
                        included in the package.
sex_ratio               Sex ratio
sex_ratio_on_grid       Plot sex ratio spatial distribution
spear                   Spearman test for timeseries
spearman                Spearman test
strata_scheme           stratification scheme
strata_scheme_rapana    stratification scheme (rapa whelk)
stratification          stratification
stratification_rapana   stratification (rapa whelk)
stratum_0_125           stratum_0_125
stratum_0_200           stratum_0_200
stratum_0_35            stratum_0_35
stratum_0_45            stratum_0_45
stratum_0_800           stratum_0_800
stratum_200_800         stratum_200_800
