BrainMap                BrainMap
Chol_samp_fun           Cholesky-based FC sampling
EM_BBM.spatial          EM Algorithms for Bayesian brain maps
IW_var                  Compute theoretical Inverse-Wishart variance of
                        covariance matrix elements
IW_var_cor              Compute theoretical Inverse-Wishart variance of
                        correlation matrix elements
UpdateTheta_BBM         Parameter Estimates in EM Algorithm for
                        Bayesian brain map
bdiag_m2                Bdiag m2
engagements             engagements
estimate.ESS            Estimation of effective sample size
estimate_nu             Universally estimate IW dof parameter nu based
                        on method of moments, so that no empirical
                        variance is under-estimated
estimate_nu_matrix      Estimate IW dof parameter nu based on method of
                        moments
estimate_prior          Estimate prior
export_prior            Export prior
fit_BBM                 Bayesian brain mapping
id_engagements          Engagements of (spatial) Bayesian brain mapping
lik                     Compute likelihood in SPDE model for ESS
                        estimation
plot.bMap.cifti         Plot fit_BBM estiamte
plot.bMap.matrix        Plot prior
plot.bMap.nifti         Plot prior
plot.bMap_eng.cifti     Plot engagements
plot.prior.cifti        Plot prior
plot.prior.gifti        Plot prior
plot.prior.matrix       Plot prior
plot.prior.nifti        Plot prior
pw_estimate             Estimate residual autocorrelation for
                        prewhitening
summary.bMap.cifti      Summarize a '"bMap.cifti"' object
summary.bMap.matrix     Summarize a '"bMap.matrix"' object
summary.bMap.nifti      Summarize a '"bMap.nifti"' object
summary.bMap_eng.cifti
                        Summarize a '"bMap_eng.cifti"' object
summary.bMap_eng.matrix
                        Summarize a '"bMap_eng.matrix"' object
summary.bMap_eng.nifti
                        Summarize a '"bMap_eng.nifti"' object
summary.prior.cifti     Summarize a '"prior.cifti"' object
summary.prior.gifti     Summarize a '"prior.gifti"' object
summary.prior.matrix    Summarize a '"prior.matrix"' object
summary.prior.nifti     Summarize a '"prior.nifti"' object
var_sq_err              Compute the error between empirical and
                        theoretical variance of covariance matrix
                        elements
var_sq_err_constrained
                        Compute the overall error between empirical and
                        theoretical variance of CORRELATION matrix
                        elements
