R: Estimate Brain Networks and Connectivity with Population-Derived Priors

# Estimate Brain Networks and Connectivity with Population-Derived Priors

## Documentation for package ‘BayesBrainMap’ version 0.2.0

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

bdiag_m2 | Bdiag m2
BrainMap | BrainMap
Chol_samp_fun | Cholesky-based FC sampling
EM_BBM.independent | EM Algorithms for Bayesian brain maps
EM_BBM.spatial | EM Algorithms for Bayesian brain maps
engagements | engagements
estimate.ESS | Estimation of effective sample size
estimate_nu | Universally estimate IW dof parameter nu based on method of moments, so that no empirical variance is under-estimated
estimate_nu_matrix | Estimate IW dof parameter nu based on method of moments
estimate_prior | Estimate prior
estimate_prior.cifti | Estimate prior
estimate_prior.gifti | Estimate prior
estimate_prior.nifti | Estimate prior
export_prior | Export prior
fit_BBM | Bayesian brain mapping
id_engagements | Engagements of (spatial) Bayesian brain mapping
IW_var | Compute theoretical Inverse-Wishart variance of covariance matrix elements
IW_var_cor | Compute theoretical Inverse-Wishart variance of correlation matrix elements
lik | Compute likelihood in SPDE model for ESS estimation
plot.bMap.cifti | Plot fit_BBM estiamte
plot.bMap.matrix | Plot prior
plot.bMap.nifti | Plot prior
plot.bMap_eng.cifti | Plot engagements
plot.prior.cifti | Plot prior
plot.prior.gifti | Plot prior
plot.prior.matrix | Plot prior
plot.prior.nifti | Plot prior
print.bMap.cifti | Summarize a '"bMap.cifti"' object
print.bMap.matrix | Summarize a '"bMap.matrix"' object
print.bMap.nifti | Summarize a '"bMap.nifti"' object
print.bMap_eng.cifti | Summarize a '"bMap_eng.cifti"' object
print.bMap_eng.matrix | Summarize a '"bMap_eng.matrix"' object
print.bMap_eng.nifti | Summarize a '"bMap_eng.nifti"' object
print.prior.cifti | Summarize a '"prior.cifti"' object
print.prior.gifti | Summarize a '"prior.gifti"' object
print.prior.matrix | Summarize a '"prior.matrix"' object
print.prior.nifti | Summarize a '"prior.nifti"' object
print.summary.bMap.cifti | Summarize a '"bMap.cifti"' object
print.summary.bMap.matrix | Summarize a '"bMap.matrix"' object
print.summary.bMap.nifti | Summarize a '"bMap.nifti"' object
print.summary.bMap_eng.cifti | Summarize a '"bMap_eng.cifti"' object
print.summary.bMap_eng.matrix | Summarize a '"bMap_eng.matrix"' object
print.summary.bMap_eng.nifti | Summarize a '"bMap_eng.nifti"' object
print.summary.prior.cifti | Summarize a '"prior.cifti"' object
print.summary.prior.gifti | Summarize a '"prior.gifti"' object
print.summary.prior.matrix | Summarize a '"prior.matrix"' object
print.summary.prior.nifti | Summarize a '"prior.nifti"' object
pw_estimate | Estimate residual autocorrelation for prewhitening
summary.bMap.cifti | Summarize a '"bMap.cifti"' object
summary.bMap.matrix | Summarize a '"bMap.matrix"' object
summary.bMap.nifti | Summarize a '"bMap.nifti"' object
summary.bMap_eng.cifti | Summarize a '"bMap_eng.cifti"' object
summary.bMap_eng.matrix | Summarize a '"bMap_eng.matrix"' object
summary.bMap_eng.nifti | Summarize a '"bMap_eng.nifti"' object
summary.prior.cifti | Summarize a '"prior.cifti"' object
summary.prior.gifti | Summarize a '"prior.gifti"' object
summary.prior.matrix | Summarize a '"prior.matrix"' object
summary.prior.nifti | Summarize a '"prior.nifti"' object
UpdateTheta_BBM | Parameter Estimates in EM Algorithm for Bayesian brain map
UpdateTheta_iBM | Parameter Estimates in EM Algorithm for Bayesian brain map
var_sq_err | Compute the error between empirical and theoretical variance of covariance matrix elements
var_sq_err_constrained | Compute the overall error between empirical and theoretical variance of CORRELATION matrix elements