R: Species Identification using DNA Barcodes

# Species Identification using DNA Barcodes

## Documentation for package ‘BarcodingR’ version 1.0-3

- DESCRIPTION file

## Help Pages

barcodes.eval | Barcodes Evaluation
barcoding.gap | Barcoding Gap Calculation
barcoding.spe.identify | Species Identification using Protein-coding Barcodes
barcoding.spe.identify2 | Species Identification Based on Fuzzy-set Method and kmer
bbsik | Bp Barcoding Species Identify using Kmer
char2NumVector | Character to Integer Vector
compare2delimitations | Comparision between two Delimitations
consensus.identify | Consensus Identification
digitize.DNA | Digitize DNAbin
DNAbin2kmerFreqMatrix | Calculation of Kmer Frequency Matrix from DNAbin for Both Reference and Query Sequences
FMF | Fuzzy Membership Function Value
FMFtheta12 | Calculate Intraspecific and Interspecific Variation
NAMES | Extracts Lables of Samples
optimize.kmer | Optimize kmer Length
pineMothCOI | pine Moth COI
pineMothITS1 | pine Moth ITS1
pineMothITS2 | pine Moth ITS2
sample.ref | Sample Random Datasets from References (DNAbin)
save.ids | Save Identifications
summarize.ref | Summarize Reference Data
TDR2 | TDR2 Species Membership Value
TibetanMoth | Tibetan Moth