R: An R Package for the Mean Measure of Divergence (MMD)

# An R Package for the Mean Measure of Divergence (MMD)

## Documentation for package ‘AnthropMMD’ version 4.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

AnthropMMD-package | An R package for the Mean Measure of Divergence (MMD)
absolute_freqs | A toy example dataset for mean measures of divergence, in a table format
AnthropMMD | An R package for the Mean Measure of Divergence (MMD)
binary_to_table | Converts a data frame of binary (i.e., presence/absence) trait information into a table of sample sizes and frequencies.
mmd | Compute MMD values from a table of sample sizes and relative frequencies
mmd_boot | Implementation of Fidalgo et al.'s (2022) method of bootstrap for the Mean Measure of Divergence
plot.anthropmmd_boot | Display a multidimensional scaling (MDS) plot using Fidalgo et al's (2022) bootstrap method for MMD
plot.anthropmmd_result | Display a multidimensional scaling (MDS) plot with the MMD dissimilarities as input
select_traits | Select a subset of traits meeting certain criteria
StartMMD | An R-Shiny application for the mean measure of divergence
start_mmd | An R-Shiny application for the mean measure of divergence
table_relfreq | Converts a table of sample sizes and frequencies into a table of sample sizes and relative frequencies.
toyMMD | A toy example dataset for mean measures of divergence, in a binary format