Package: AmpGram
Type: Package
Title: Prediction of Antimicrobial Peptides
Version: 1.0
LazyData: TRUE
Date: 2020-05-19
Authors@R: c(person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("cre", "aut")),
           person("Katarzyna", "Sidorczuk", 
           email = "sidorczuk.katarzyna17@gmail.com",
           role = c("ctb")),
           person("Filip", "Pietluch", 
           email = "fpietluch@gmail.com",
           role = c("ctb")),
           person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           role = c("aut")),
           person("Stefan", "Roediger", 
           email = "stefan.roediger@b-tu.de", 
           comment = c(ORCID = "0000-0002-1441-6512"),
           role = c("ctb")),
           person("Jaroslaw", "Chilimoniuk", 
           email = "jaroslaw.chilimoniuk@gmail.com", 
           comment = c(ORCID = "0000-0001-5467-018X"),
           role = c("ctb")))
Description: Predicts antimicrobial peptides using random forests trained on the
    n-gram encoded peptides. The implemented algorithm can be accessed from
    both the command line and shiny-based GUI. The AmpGram model is too large 
    for CRAN and it has to be downloaded separately from the repository:
    <https://github.com/michbur/AmpGramModel>.
License: GPL-3
URL: https://github.com/michbur/AmpGram
BugReports: https://github.com/michbur/AmpGram/issues
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: biogram, devtools, pbapply, ranger, shiny, stringi
Suggests: DT, ggplot2, pander, rmarkdown, shinythemes, spelling
Repository: CRAN
RoxygenNote: 7.1.0
Language: en-US
NeedsCompilation: no
Packaged: 2020-05-22 11:38:49 UTC; michal
Author: Michal Burdukiewicz [cre, aut]
    (<https://orcid.org/0000-0001-8926-582X>),
  Katarzyna Sidorczuk [ctb],
  Filip Pietluch [ctb],
  Dominik Rafacz [aut],
  Stefan Roediger [ctb] (<https://orcid.org/0000-0002-1441-6512>),
  Jaroslaw Chilimoniuk [ctb] (<https://orcid.org/0000-0001-5467-018X>)
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Date/Publication: 2020-05-31 10:10:03 UTC
Built: R 4.6.0; ; 2026-04-29 10:16:47 UTC; unix
