R: Statistical Genetics Data Objects and Loaders

# Statistical Genetics Data Objects and Loaders

## Documentation for package ‘statgen’ version 0.3.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

statgen-package | Statistical Genetics Data Objects and Loaders
a1 | ReferencePanel objects
a1freq | LD panel loading, preparation, and operations
a1_hash64 | ReferencePanel objects
a2 | ReferencePanel objects
a2_hash64 | ReferencePanel objects
annomat | AnnotationPanel objects
annonames | AnnotationPanel objects
beta_vec | Sumstats objects
bp | ReferencePanel objects
chr | ReferencePanel objects
create_annotation | AnnotationPanel objects
create_annotations | AnnotationPanel objects
create_sumstats | Sumstats objects
default_chrX_sex | LD panel loading, preparation, and operations
eaf_vec | Sumstats objects
fast_prune | LD panel loading, preparation, and operations
father_id | GenotypePanel objects
fetch_genotypes | GenotypePanel objects
fetch_genotypes_int8 | GenotypePanel objects
fid | GenotypePanel objects
get_verbosity | Get or Set Runtime Verbosity
iid | GenotypePanel objects
info_vec | Sumstats objects
is_female | GenotypePanel objects
is_male | GenotypePanel objects
is_object_compatible | ReferencePanel objects
is_present | Sumstats objects
is_single_nucleotide_variant | ReferencePanel objects
is_strand_ambiguous | ReferencePanel objects
is_subject_present | GenotypePanel objects
load_annotations | AnnotationPanel objects
load_annotations_cache | AnnotationPanel objects
load_genotype | GenotypePanel objects
load_genotype_cache | GenotypePanel objects
load_ld | LD panel loading, preparation, and operations
load_ld_reference | LD panel loading, preparation, and operations
load_reference | ReferencePanel objects
load_reference_cache | ReferencePanel objects
load_sumstats | Sumstats objects
load_sumstats_cache | Sumstats objects
logpvec | Sumstats objects
mother_id | GenotypePanel objects
multiply_r2 | LD panel loading, preparation, and operations
num_annot | AnnotationPanel objects
num_sample | GenotypePanel objects
num_snp | ReferencePanel objects
nvec | Sumstats objects
ploidy_female | GenotypePanel objects
ploidy_male | GenotypePanel objects
prepare_ld_npz_for_r | LD panel loading, preparation, and operations
reference | LD panel loading, preparation, and operations
save_annotations_cache | AnnotationPanel objects
save_cache | ReferencePanel objects
save_genotype_cache | GenotypePanel objects
save_reference_cache | ReferencePanel objects
save_sumstats_cache | Sumstats objects
select_annotations | AnnotationPanel objects
select_shards | ReferencePanel objects
set_verbosity | Get or Set Runtime Verbosity
sex | GenotypePanel objects
se_vec | Sumstats objects
shards | ReferencePanel objects
shard_offsets | ReferencePanel objects
snp | ReferencePanel objects
source_layout | GenotypePanel objects
source_row0 | GenotypePanel objects
union_annotations | AnnotationPanel objects
validate_checksums | ReferencePanel objects
validate_ld_distribution | LD panel loading, preparation, and operations
version | Return the statgen Package Version
zvec | Sumstats objects