R: Spatial Statistical Modeling and Prediction

# Spatial Statistical Modeling and Prediction

## Documentation for package ‘spmodel’ version 0.13.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A C D E F G H I L M P R S T V

## -- A --

AICc | Compute AICc of fitted model objects
anova.spautor | Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spgautor | Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spglm | Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.splm | Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spmodel | Compute analysis of variance and likelihood ratio tests of fitted model objects
augment.spautor | Augment data with information from fitted model objects
augment.spgautor | Augment data with information from fitted model objects
augment.spglm | Augment data with information from fitted model objects
augment.splm | Augment data with information from fitted model objects
augment.spmodel | Augment data with information from fitted model objects
AUROC | Area Under Receiver Operating Characteristic Curve
AUROC.spgautor | Area Under Receiver Operating Characteristic Curve
AUROC.spglm | Area Under Receiver Operating Characteristic Curve

## -- C --

caribou | A caribou forage experiment
coef.spautor | Extract fitted model coefficients
coef.spgautor | Extract fitted model coefficients
coef.spglm | Extract fitted model coefficients
coef.splm | Extract fitted model coefficients
coef.spmodel | Extract fitted model coefficients
coefficients.spautor | Extract fitted model coefficients
coefficients.spgautor | Extract fitted model coefficients
coefficients.spglm | Extract fitted model coefficients
coefficients.splm | Extract fitted model coefficients
confint.spautor | Confidence intervals for fitted model parameters
confint.spgautor | Confidence intervals for fitted model parameters
confint.spglm | Confidence intervals for fitted model parameters
confint.splm | Confidence intervals for fitted model parameters
confint.spmodel | Confidence intervals for fitted model parameters
cooks.distance.spautor | Compute Cook's distance
cooks.distance.spgautor | Compute Cook's distance
cooks.distance.spglm | Compute Cook's distance
cooks.distance.splm | Compute Cook's distance
cooks.distance.spmodel | Compute Cook's distance
covmatrix | Create a covariance matrix
covmatrix.spautor | Create a covariance matrix
covmatrix.spgautor | Create a covariance matrix
covmatrix.spglm | Create a covariance matrix
covmatrix.splm | Create a covariance matrix

## -- D --

deviance.spautor | Fitted model deviance
deviance.spgautor | Fitted model deviance
deviance.spglm | Fitted model deviance
deviance.splm | Fitted model deviance
deviance.spmodel | Fitted model deviance
dispersion_initial | Create a dispersion parameter initial object
dispersion_params | Create a dispersion parameter object

## -- E --

eacf | Compute the empirical autocovariance
esv | Compute the empirical semivariogram

## -- F --

fc_borders | Four Corners State Borders
fitted.spautor | Extract model fitted values
fitted.spgautor | Extract model fitted values
fitted.spglm | Extract model fitted values
fitted.splm | Extract model fitted values
fitted.spmodel | Extract model fitted values
fitted.values.spautor | Extract model fitted values
fitted.values.spgautor | Extract model fitted values
fitted.values.spglm | Extract model fitted values
fitted.values.splm | Extract model fitted values
formula.spautor | Model formulae
formula.spgautor | Model formulae
formula.spglm | Model formulae
formula.splm | Model formulae
formula.spmodel | Model formulae

## -- G --

glance.spautor | Glance at a fitted model object
glance.spgautor | Glance at a fitted model object
glance.spglm | Glance at a fitted model object
glance.splm | Glance at a fitted model object
glance.spmodel | Glance at a fitted model object
glances | Glance at many fitted model objects
glances.spautor | Glance at many fitted model objects
glances.spautor_list | Glance at many fitted model objects
glances.spgautor | Glance at many fitted model objects
glances.spgautor_list | Glance at many fitted model objects
glances.spglm | Glance at many fitted model objects
glances.spglm_list | Glance at many fitted model objects
glances.splm | Glance at many fitted model objects
glances.splm_list | Glance at many fitted model objects

## -- H --

hatvalues.spautor | Compute leverage (hat) values
hatvalues.spgautor | Compute leverage (hat) values
hatvalues.spglm | Compute leverage (hat) values
hatvalues.splm | Compute leverage (hat) values
hatvalues.spmodel | Compute leverage (hat) values

## -- I --

influence.spautor | Regression diagnostics
influence.spgautor | Regression diagnostics
influence.spglm | Regression diagnostics
influence.splm | Regression diagnostics
influence.spmodel | Regression diagnostics

## -- L --

labels.spautor | Find labels from object
labels.spgautor | Find labels from object
labels.spglm | Find labels from object
labels.splm | Find labels from object
labels.spmodel | Find labels from object
lake | National Lakes Assessment Data
lake_preds | Lakes Prediction Data
logLik.spautor | Extract log-likelihood
logLik.spgautor | Extract log-likelihood
logLik.spglm | Extract log-likelihood
logLik.splm | Extract log-likelihood
logLik.spmodel | Extract log-likelihood
loocv | Perform leave-one-out cross validation
loocv.spautor | Perform leave-one-out cross validation
loocv.spgautor | Perform leave-one-out cross validation
loocv.spglm | Perform leave-one-out cross validation
loocv.splm | Perform leave-one-out cross validation

## -- M --

model.frame.spautor | Extract the model frame from a fitted model object
model.frame.spgautor | Extract the model frame from a fitted model object
model.frame.spglm | Extract the model frame from a fitted model object
model.frame.splm | Extract the model frame from a fitted model object
model.frame.spmodel | Extract the model frame from a fitted model object
model.matrix.spautor | Extract the model matrix from a fitted model object
model.matrix.spgautor | Extract the model matrix from a fitted model object
model.matrix.spglm | Extract the model matrix from a fitted model object
model.matrix.splm | Extract the model matrix from a fitted model object
model.matrix.spmodel | Extract the model matrix from a fitted model object
moose | Moose counts and presence in Alaska, USA
moose_preds | Locations at which to predict moose counts and presence in Alaska, USA
moss | Heavy metals in mosses near a mining road in Alaska, USA

## -- P --

plot.eacf | Compute the empirical autocovariance
plot.esv | Compute the empirical semivariogram
plot.spautor | Plot fitted model diagnostics
plot.spgautor | Plot fitted model diagnostics
plot.spglm | Plot fitted model diagnostics
plot.splm | Plot fitted model diagnostics
plot.spmodel | Plot fitted model diagnostics
predict.spautor | Model predictions (Kriging)
predict.spautorRF | Model predictions (Kriging)
predict.spautorRF_list | Model predictions (Kriging)
predict.spautor_list | Model predictions (Kriging)
predict.spgautor | Model predictions (Kriging)
predict.spgautor_list | Model predictions (Kriging)
predict.spglm | Model predictions (Kriging)
predict.spglm_list | Model predictions (Kriging)
predict.splm | Model predictions (Kriging)
predict.splmRF | Model predictions (Kriging)
predict.splmRF_list | Model predictions (Kriging)
predict.splm_list | Model predictions (Kriging)
predict.spmodel | Model predictions (Kriging)
print.anova.spautor | Print values
print.anova.spgautor | Print values
print.anova.spglm | Print values
print.anova.splm | Print values
print.spautor | Print values
print.spgautor | Print values
print.spglm | Print values
print.splm | Print values
print.spmodel | Print values
print.summary.spautor | Print values
print.summary.spgautor | Print values
print.summary.spglm | Print values
print.summary.splm | Print values
pseudoR2 | Compute a pseudo r-squared
pseudoR2.spautor | Compute a pseudo r-squared
pseudoR2.spgautor | Compute a pseudo r-squared
pseudoR2.spglm | Compute a pseudo r-squared
pseudoR2.splm | Compute a pseudo r-squared

## -- R --

randcov_initial | Create a random effects covariance parameter initial object
randcov_params | Create a random effects covariance parameter object
resid.spautor | Extract fitted model residuals
resid.spgautor | Extract fitted model residuals
resid.spglm | Extract fitted model residuals
resid.splm | Extract fitted model residuals
residuals.spautor | Extract fitted model residuals
residuals.spgautor | Extract fitted model residuals
residuals.spglm | Extract fitted model residuals
residuals.splm | Extract fitted model residuals
residuals.spmodel | Extract fitted model residuals
rstandard.spautor | Extract fitted model residuals
rstandard.spgautor | Extract fitted model residuals
rstandard.spglm | Extract fitted model residuals
rstandard.splm | Extract fitted model residuals

## -- S --

seal | Estimated harbor-seal trends from abundance data in southeast Alaska, USA
spautor | Fit spatial autoregressive models
spautorRF | Fit random forest spatial residual models
spcov_initial | Create a spatial covariance parameter initial object
spcov_params | Create a spatial covariance parameter object
spgautor | Fit spatial generalized autoregressive models
spglm | Fit spatial generalized linear models
splm | Fit spatial linear models
splmRF | Fit random forest spatial residual models
sprbeta | Simulate a spatial beta random variable
sprbinom | Simulate a spatial binomial random variable
sprgamma | Simulate a spatial gamma random variable
sprinvgauss | Simulate a spatial inverse gaussian random variable
sprnbinom | Simulate a spatial negative binomial random variable
sprnorm | Simulate a spatial normal (Gaussian) random variable
sprnorm.car | Simulate a spatial normal (Gaussian) random variable
sprnorm.exponential | Simulate a spatial normal (Gaussian) random variable
sprnorm.ie | Simulate a spatial normal (Gaussian) random variable
sprnorm.none | Simulate a spatial normal (Gaussian) random variable
sprpois | Simulate a spatial Poisson random variable
sulfate | Sulfate atmospheric deposition in the conterminous USA
sulfate_preds | Locations at which to predict sulfate atmospheric deposition in the conterminous USA
summary.spautor | Summarize a fitted model object
summary.spgautor | Summarize a fitted model object
summary.spglm | Summarize a fitted model object
summary.splm | Summarize a fitted model object
summary.spmodel | Summarize a fitted model object

## -- T --

texas | Texas Turnout Data
tidy.anova.spautor | Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.spgautor | Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.spglm | Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.splm | Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.spautor | Tidy a fitted model object
tidy.spgautor | Tidy a fitted model object
tidy.spglm | Tidy a fitted model object
tidy.splm | Tidy a fitted model object
tidy.spmodel | Tidy a fitted model object

## -- V --

varcomp | Variability component comparison
varcomp.spautor | Variability component comparison
varcomp.spgautor | Variability component comparison
varcomp.spglm | Variability component comparison
varcomp.splm | Variability component comparison
vcov.spautor | Calculate variance-covariance matrix for a fitted model object
vcov.spgautor | Calculate variance-covariance matrix for a fitted model object
vcov.spglm | Calculate variance-covariance matrix for a fitted model object
vcov.splm | Calculate variance-covariance matrix for a fitted model object
vcov.spmodel | Calculate variance-covariance matrix for a fitted model object