Package: rtemis.a3
Title: Amino Acid Annotation (A3) Format
Version: 0.5.3
Date: 2026-04-24
Authors@R: 
    person(given = "E.D.", family = "Gennatas", role = c("aut", "cre", "cph"),
           email = "gennatas@gmail.com",
           comment = c(ORCID = "0000-0001-9280-3609"))
Description: Implements the Amino Acid Annotation (A3) format using 'S7' classes.
    The A3 format is a structured schema for annotating amino acid sequences with site, region, 
    post-translational modification (PTM), processing event, and variant information. 
    Provides functions to create, read, and write A3 objects, and to import annotations from 
    'UniProt', 'AlphaFold', 'PDBe', 'ClinVar', and 'Ensembl'.
URL: https://a3.rtemis.org
BugReports: https://github.com/rtemis-org/a3/issues
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.1.0)
Imports: cli, data.table, rtemis.core, S7, utils
Suggests: biomaRt, httr, jsonlite, seqinr, testthat (>= 3.0.0)
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-04-25 04:43:12 UTC; sdg
Author: E.D. Gennatas [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-9280-3609>)
Maintainer: E.D. Gennatas <gennatas@gmail.com>
Repository: CRAN
Date/Publication: 2026-04-28 19:30:18 UTC
Built: R 4.5.2; ; 2026-05-01 17:40:20 UTC; unix
