add_admid               add_admid
add_allometry           add_allometry
add_bioavailability     add_bioavailability
add_cmt                 add_cmt
add_covariate_effect    add_covariate_effect
add_derivative          add_derivative
add_effect_compartment
                        add_effect_compartment
add_estimation_step     add_estimation_step
add_iiv                 add_iiv
add_indirect_effect     add_indirect_effect
add_individual_parameter
                        add_individual_parameter
add_iov                 add_iov
add_lag_time            add_lag_time
add_metabolite          add_metabolite
add_output_variables    add_output_variables
add_parameter_uncertainty_step
                        add_parameter_uncertainty_step
add_pd_iiv              add_pd_iiv
add_peripheral_compartment
                        add_peripheral_compartment
add_pk_iiv              add_pk_iiv
add_population_parameter
                        add_population_parameter
add_predictions         add_predictions
add_residuals           add_residuals
add_time_after_dose     add_time_after_dose
add_time_of_last_dose   add_time_of_last_dose
append_estimation_step_options
                        append_estimation_step_options
bin_observations        bin_observations
binarize_dataset        binarize_dataset
broadcast_log           broadcast_log
bump_model_number       bump_model_number
calculate_aic           calculate_aic
calculate_bic           calculate_bic
calculate_corr_from_cov
                        calculate_corr_from_cov
calculate_corr_from_prec
                        calculate_corr_from_prec
calculate_cov_from_corrse
                        calculate_cov_from_corrse
calculate_cov_from_prec
                        calculate_cov_from_prec
calculate_epsilon_gradient_expression
                        calculate_epsilon_gradient_expression
calculate_eta_gradient_expression
                        calculate_eta_gradient_expression
calculate_eta_shrinkage
                        calculate_eta_shrinkage
calculate_individual_parameter_statistics
                        calculate_individual_parameter_statistics
calculate_individual_shrinkage
                        calculate_individual_shrinkage
calculate_parameters_from_ucp
                        calculate_parameters_from_ucp
calculate_pk_parameters_statistics
                        calculate_pk_parameters_statistics
calculate_prec_from_corrse
                        calculate_prec_from_corrse
calculate_prec_from_cov
                        calculate_prec_from_cov
calculate_se_from_cov   calculate_se_from_cov
calculate_se_from_prec
                        calculate_se_from_prec
calculate_summary_statistic
                        calculate_summary_statistic
calculate_ucp_scale     calculate_ucp_scale
check_dataset           check_dataset
check_high_correlations
                        check_high_correlations
check_parameters_near_bounds
                        check_parameters_near_bounds
check_pharmpy           Checks version of Pharmpy/pharmr
check_setup             Checks setup of Pharmpy/pharmr
cholesky_decompose      cholesky_decompose
cleanup_model           cleanup_model
convert_model           convert_model
convert_unit            convert_unit
create_basic_kpd_model
                        create_basic_kpd_model
create_basic_pd_model   create_basic_pd_model
create_basic_pk_model   create_basic_pk_model
create_config_template
                        create_config_template
create_joint_distribution
                        create_joint_distribution
create_report           create_report
create_rng              create_rng
create_symbol           create_symbol
deidentify_data         deidentify_data
display_odes            display_odes
drop_columns            drop_columns
drop_dropped_columns    drop_dropped_columns
evaluate_epsilon_gradient
                        evaluate_epsilon_gradient
evaluate_eta_gradient   evaluate_eta_gradient
evaluate_expression     evaluate_expression
evaluate_individual_prediction
                        evaluate_individual_prediction
evaluate_population_prediction
                        evaluate_population_prediction
evaluate_weighted_residuals
                        evaluate_weighted_residuals
expand_additional_doses
                        expand_additional_doses
export_model_files      export_model_files
filter_dataset          filter_dataset
find_clearance_parameters
                        find_clearance_parameters
find_volume_parameters
                        find_volume_parameters
fit                     fit
fix_or_unfix_parameters
                        fix_or_unfix_parameters
fix_parameters          fix_parameters
fix_parameters_to       fix_parameters_to
get_admid               get_admid
get_baselines           get_baselines
get_bioavailability     get_bioavailability
get_central_volume_and_clearance
                        get_central_volume_and_clearance
get_cmt                 get_cmt
get_column_name         get_column_name
get_concentration_parameters_from_data
                        get_concentration_parameters_from_data
get_config_path         get_config_path
get_covariate_baselines
                        get_covariate_baselines
get_covariate_effects   get_covariate_effects
get_doseid              get_doseid
get_doses               get_doses
get_dv_symbol           get_dv_symbol
get_evid                get_evid
get_ids                 get_ids
get_individual_parameters
                        get_individual_parameters
get_individual_prediction_expression
                        get_individual_prediction_expression
get_initial_conditions
                        get_initial_conditions
get_lag_times           get_lag_times
get_mdv                 get_mdv
get_model_code          get_model_code
get_model_covariates    get_model_covariates
get_mu_connected_to_parameter
                        get_mu_connected_to_parameter
get_nested_model        get_nested_model
get_number_of_individuals
                        get_number_of_individuals
get_number_of_observations
                        get_number_of_observations
get_number_of_observations_per_individual
                        get_number_of_observations_per_individual
get_number_of_peripheral_compartments
                        get_number_of_peripheral_compartments
get_number_of_transit_compartments
                        get_number_of_transit_compartments
get_observation_expression
                        get_observation_expression
get_observations        get_observations
get_omegas              get_omegas
get_parameter_rv        get_parameter_rv
get_pd_parameters       get_pd_parameters
get_pk_parameters       get_pk_parameters
get_population_prediction_expression
                        get_population_prediction_expression
get_rv_parameters       get_rv_parameters
get_sigmas              get_sigmas
get_thetas              get_thetas
get_unit_of             get_unit_of
get_zero_order_inputs   get_zero_order_inputs
greekify_model          greekify_model
has_additive_error_model
                        has_additive_error_model
has_combined_error_model
                        has_combined_error_model
has_covariate_effect    has_covariate_effect
has_first_order_absorption
                        has_first_order_absorption
has_first_order_elimination
                        has_first_order_elimination
has_instantaneous_absorption
                        has_instantaneous_absorption
has_linear_odes         has_linear_odes
has_linear_odes_with_real_eigenvalues
                        has_linear_odes_with_real_eigenvalues
has_michaelis_menten_elimination
                        has_michaelis_menten_elimination
has_mixed_mm_fo_elimination
                        has_mixed_mm_fo_elimination
has_mu_reference        has_mu_reference
has_odes                has_odes
has_presystemic_metabolite
                        has_presystemic_metabolite
has_proportional_error_model
                        has_proportional_error_model
has_random_effect       has_random_effect
has_seq_zo_fo_absorption
                        has_seq_zo_fo_absorption
has_weibull_absorption
                        has_weibull_absorption
has_weighted_error_model
                        has_weighted_error_model
has_zero_order_absorption
                        has_zero_order_absorption
has_zero_order_elimination
                        has_zero_order_elimination
infer_datatypes         infer_datatypes
insert_ebes_into_dataset
                        insert_ebes_into_dataset
install_pharmpy         Install Pharmpy
install_pharmpy_devel   Install Pharmpy (with specified version)
is_binary               is_binary
is_linearized           is_linearized
is_real                 is_real
is_simulation_model     is_simulation_model
is_strictness_fulfilled
                        is_strictness_fulfilled
list_models             list_models
list_time_varying_covariates
                        list_time_varying_covariates
load_dataset            load_dataset
load_example_model      load_example_model
load_example_modelfit_results
                        load_example_modelfit_results
make_declarative        make_declarative
map_eta_parameters      map_eta_parameters
mu_reference_model      mu_reference_model
omit_data               omit_data
open_context            open_context
plot_abs_cwres_vs_ipred
                        plot_abs_cwres_vs_ipred
plot_cwres_vs_idv       plot_cwres_vs_idv
plot_dv_vs_ipred        plot_dv_vs_ipred
plot_dv_vs_pred         plot_dv_vs_pred
plot_eta_distributions
                        plot_eta_distributions
plot_individual_predictions
                        plot_individual_predictions
plot_iofv_vs_iofv       plot_iofv_vs_iofv
plot_transformed_eta_distributions
                        plot_transformed_eta_distributions
plot_vpc                plot_vpc
predict_influential_individuals
                        predict_influential_individuals
predict_influential_outliers
                        predict_influential_outliers
predict_outliers        predict_outliers
print_fit_summary       print_fit_summary
print_log               print_log
print_model_code        print_model_code
print_model_symbols     print_model_symbols
print_pharmpy_version   Print pharmpy version
read_dataset_from_datainfo
                        read_dataset_from_datainfo
read_model              read_model
read_model_from_string
                        read_model_from_string
read_modelfit_results   read_modelfit_results
read_results            read_results
remove_bioavailability
                        remove_bioavailability
remove_covariate_effect
                        remove_covariate_effect
remove_derivative       remove_derivative
remove_error_model      remove_error_model
remove_estimation_step
                        remove_estimation_step
remove_iiv              remove_iiv
remove_iov              remove_iov
remove_lag_time         remove_lag_time
remove_loq_data         remove_loq_data
remove_parameter_uncertainty_step
                        remove_parameter_uncertainty_step
remove_peripheral_compartment
                        remove_peripheral_compartment
remove_predictions      remove_predictions
remove_residuals        remove_residuals
remove_unused_columns   remove_unused_columns
remove_unused_parameters_and_rvs
                        remove_unused_parameters_and_rvs
rename_symbols          rename_symbols
replace_fixed_thetas    replace_fixed_thetas
replace_non_random_rvs
                        replace_non_random_rvs
resample_data           resample_data
reset_index             Reset index
reset_indices_results   Reset result indices
retrieve_model          retrieve_model
retrieve_modelfit_results
                        retrieve_modelfit_results
retrieve_models         retrieve_models
run_allometry           run_allometry
run_amd                 run_amd
run_bootstrap           run_bootstrap
run_covsearch           run_covsearch
run_estmethod           run_estmethod
run_iivsearch           run_iivsearch
run_iovsearch           run_iovsearch
run_linearize           run_linearize
run_modelfit            run_modelfit
run_modelrank           run_modelrank
run_modelsearch         run_modelsearch
run_pdsearch            run_pdsearch
run_qa                  run_qa
run_retries             run_retries
run_ruvsearch           run_ruvsearch
run_simulation          run_simulation
run_structsearch        run_structsearch
run_tool                run_tool
run_vpc                 run_vpc
sample_individual_estimates
                        sample_individual_estimates
sample_parameters_from_covariance_matrix
                        sample_parameters_from_covariance_matrix
sample_parameters_uniformly
                        sample_parameters_uniformly
set_additive_error_model
                        set_additive_error_model
set_baseline_effect     set_baseline_effect
set_combined_error_model
                        set_combined_error_model
set_covariates          set_covariates
set_dataset             set_dataset
set_description         set_description
set_direct_effect       set_direct_effect
set_dtbs_error_model    set_dtbs_error_model
set_dvid                set_dvid
set_estimation_step     set_estimation_step
set_evaluation_step     set_evaluation_step
set_first_order_absorption
                        set_first_order_absorption
set_first_order_elimination
                        set_first_order_elimination
set_iiv_on_ruv          set_iiv_on_ruv
set_initial_condition   set_initial_condition
set_initial_estimates   set_initial_estimates
set_instantaneous_absorption
                        set_instantaneous_absorption
set_lloq_data           set_lloq_data
set_lower_bounds        set_lower_bounds
set_michaelis_menten_elimination
                        set_michaelis_menten_elimination
set_mixed_mm_fo_elimination
                        set_mixed_mm_fo_elimination
set_n_transit_compartments
                        set_n_transit_compartments
set_name                set_name
set_ode_solver          set_ode_solver
set_peripheral_compartments
                        set_peripheral_compartments
set_placebo_model       set_placebo_model
set_power_on_ruv        set_power_on_ruv
set_property            set_property
set_proportional_error_model
                        set_proportional_error_model
set_reference_values    set_reference_values
set_seq_zo_fo_absorption
                        set_seq_zo_fo_absorption
set_simulation          set_simulation
set_time_varying_error_model
                        set_time_varying_error_model
set_tmdd                set_tmdd
set_transit_compartments
                        set_transit_compartments
set_unit                set_unit
set_upper_bounds        set_upper_bounds
set_weibull_absorption
                        set_weibull_absorption
set_weighted_error_model
                        set_weighted_error_model
set_zero_order_absorption
                        set_zero_order_absorption
set_zero_order_elimination
                        set_zero_order_elimination
set_zero_order_input    set_zero_order_input
simplify_expression     simplify_expression
solve_ode_system        solve_ode_system
split_joint_distribution
                        split_joint_distribution
summarize_modelfit_results
                        summarize_modelfit_results
transform_blq           transform_blq
transform_etas_boxcox   transform_etas_boxcox
transform_etas_john_draper
                        transform_etas_john_draper
transform_etas_tdist    transform_etas_tdist
translate_nmtran_time   translate_nmtran_time
unconstrain_parameters
                        unconstrain_parameters
undrop_columns          undrop_columns
unfix_parameters        unfix_parameters
unfix_parameters_to     unfix_parameters_to
unload_dataset          unload_dataset
update_initial_individual_estimates
                        update_initial_individual_estimates
use_thetas_for_error_stdev
                        use_thetas_for_error_stdev
write_csv               write_csv
write_dataset           write_dataset
write_model             write_model
write_results           write_results
