@Manual{Allaire_2025,
  title = {quarto: R Interface to 'Quarto' Markdown Publishing System},
  author = {JJ Allaire and Christophe Dervieux},
  year = {2025},
  version = {R package 1.5.1},
  url = {https://github.com/quarto-dev/quarto-r},
}

@Manual{Allaire_2026,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2026},
  version = {R package 2.31},
  url = {https://github.com/rstudio/rmarkdown},
}

@Article{Antonov_2023,
  title = {igraph enables fast and robust network analysis across programming languages},
  author = {Michael Antonov and G{\a'a}bor Cs{\a'a}rdi and Szabolcs Horv{\a'a}t and Kirill M{\"u}ller and Tam{\a'a}s Nepusz and Daniel Noom and Ma{\"e}lle Salmon and Vincent Traag and Brooke Foucault Welles and Fabio Zanini},
  journal = {arXiv preprint arXiv:2311.10260},
  year = {2023},
  doi = {10.48550/arXiv.2311.10260},
}

@Manual{Attali_2024,
  title = {shinyalert: Easily Create Pretty Popup Messages (Modals) in 'Shiny'},
  author = {Dean Attali and Tristan Edwards},
  year = {2024},
  version = {R package 3.1.0},
  url = {https://github.com/daattali/shinyalert},
}

@Manual{Attali_2026,
  title = {shinyjs: Easily Improve the User Experience of Your Shiny Apps in Seconds},
  author = {Dean Attali},
  year = {2026},
  version = {R package 2.1.1},
  url = {https://CRAN.R-project.org/package=shinyjs},
  doi = {10.32614/CRAN.package.shinyjs},
}

@Manual{Bailey_2025,
  title = {shinyBS: Extra Twitter Bootstrap Components for Shiny},
  author = {Eric Bailey},
  year = {2025},
  version = {R package 0.63.0},
  url = {https://CRAN.R-project.org/package=shinyBS},
  doi = {10.32614/CRAN.package.shinyBS},
}

@Article{Balduzzi_2019,
  title = {How to perform a meta-analysis with {R}: a practical tutorial},
  author = {Sara Balduzzi and Gerta R{\"u}cker and Guido Schwarzer},
  journal = {Evidence-Based Mental Health},
  year = {2019},
  volume = {22},
  pages = {153--160},
}

@Article{Balduzzi_2023,
  title = {{netmeta}: An {R} Package for Network Meta-Analysis Using Frequentist Methods},
  author = {Sara Balduzzi and Gerta R\"ucker and Adriani Nikolakopoulou and Theodoros Papakonstantinou and Georgia Salanti and Orestis Efthimiou and Guido Schwarzer},
  journal = {Journal of Statistical Software},
  year = {2023},
  volume = {106},
  number = {2},
  pages = {1--40},
  doi = {10.18637/jss.v106.i02},
}

@Manual{Barrett_2026,
  title = {data.table: Extension of `data.frame`},
  author = {Tyson Barrett and Matt Dowle and Arun Srinivasan and Jan Gorecki and Michael Chirico and Toby Hocking and Benjamin Schwendinger and Ivan Krylov},
  year = {2026},
  version = {R package 1.18.2.1},
  url = {https://CRAN.R-project.org/package=data.table},
  doi = {10.32614/CRAN.package.data.table},
}

@Manual{Bengtsson_2025,
  title = {R.utils: Various Programming Utilities},
  author = {Henrik Bengtsson},
  year = {2025},
  version = {R package 2.13.0},
  url = {https://henrikbengtsson.github.io/R.utils/},
}

@Manual{Boettiger_2021,
  title = {knitcitations: Citations for 'Knitr' Markdown Files},
  author = {Carl Boettiger},
  year = {2021},
  version = {R package 1.0.12},
  url = {https://github.com/cboettig/knitcitations},
}

@Manual{Chan_2023,
  title = {rio: A Swiss-army knife for data file I/O},
  author = {Chung-hong Chan and Thomas J. Leeper and Jason Becker and David Schoch},
  url = {https://cran.r-project.org/package=rio},
  year = {2023},
}

@Manual{Chang_2025,
  title = {R6: Encapsulated Classes with Reference Semantics},
  author = {Winston Chang},
  year = {2025},
  version = {R package 2.6.1},
  url = {https://CRAN.R-project.org/package=R6},
  doi = {10.32614/CRAN.package.R6},
}

@Article{Csardi_2006,
  title = {The igraph software package for complex network research},
  author = {G{\a'a}bor Cs{\a'a}rdi and Tam{\a'a}s Nepusz},
  journal = {InterJournal},
  volume = {Complex Systems},
  pages = {1695},
  year = {2006},
  url = {https://igraph.org},
}

@Manual{Csardi_2025,
  title = {zip: Cross-Platform 'zip' Compression},
  author = {G{\a'a}bor Cs{\a'a}rdi},
  year = {2025},
  version = {R package 2.3.3},
  url = {https://github.com/r-lib/zip},
}

@Manual{Csardi_2026,
  title = {{igraph}: Network Analysis and Visualization in R},
  author = {G{\a'a}bor Cs{\a'a}rdi and Tam{\a'a}s Nepusz and Vincent Traag and Szabolcs Horv{\a'a}t and Fabio Zanini and Daniel Noom and Kirill M{\"u}ller and David Schoch and Ma{\"e}lle Salmon},
  year = {2026},
  version = {R package 2.2.3},
  doi = {10.5281/zenodo.7682609},
  url = {https://CRAN.R-project.org/package=igraph},
}

@Article{Gabry_2019,
  title = {Visualization in Bayesian workflow},
  author = {Jonah Gabry and Daniel Simpson and Aki Vehtari and Michael Betancourt and Andrew Gelman},
  year = {2019},
  journal = {J. R. Stat. Soc. A},
  volume = {182},
  issue = {2},
  pages = {389-402},
  doi = {10.1111/rssa.12378},
}

@Misc{Gabry_2025,
  title = {bayesplot: Plotting for Bayesian Models},
  author = {Jonah Gabry and Tristan Mahr},
  year = {2025},
  version = {R package 1.15.0},
  url = {https://mc-stan.org/bayesplot/},
}

@Article{Ganz_2016,
  title = {{rintrojs}: A Wrapper for the Intro.js Library},
  author = {Carl Ganz},
  journal = {Journal of Open Source Software},
  publisher = {The Open Journal},
  year = {2016},
  volume = {1},
  issue = {6},
  month = {October},
  url = {https://dx.doi.org/10.21105/joss.00063},
}

@Manual{Gao_2026,
  title = {mirai: Minimalist Async Evaluation Framework for R},
  author = {Charlie Gao},
  year = {2026},
  version = {R package 2.6.1},
  url = {https://CRAN.R-project.org/package=mirai},
  doi = {10.32614/CRAN.package.mirai},
}

@Article{Grolemund_2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Manual{Harmon_2023,
  title = {cookies: Use Browser Cookies with 'shiny'},
  author = {Jon Harmon},
  year = {2023},
  version = {R package 0.2.3},
  url = {https://github.com/r4ds/cookies},
}

@Manual{Hester_2024,
  title = {glue: Interpreted String Literals},
  author = {Jim Hester and Jennifer Bryan},
  year = {2024},
  version = {R package 1.8.0},
  url = {https://CRAN.R-project.org/package=glue},
  doi = {10.32614/CRAN.package.glue},
}

@Manual{Meyer_2024,
  title = {shinybusy: Busy Indicators and Notifications for 'Shiny' Applications},
  author = {Fanny Meyer and Victor Perrier},
  year = {2024},
  version = {R package 0.3.3},
  url = {https://github.com/dreamRs/shinybusy},
}

@Manual{Moon_2020,
  title = {ggiraphExtra: Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'},
  author = {Keon-Woong Moon},
  year = {2020},
  version = {R package 0.3.0},
  url = {https://github.com/cardiomoon/ggiraphExtra},
}

@Article{Ooms_2014,
  title = {The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects},
  author = {Jeroen Ooms},
  journal = {arXiv:1403.2805 [stat.CO]},
  year = {2014},
  url = {https://arxiv.org/abs/1403.2805},
}

@Manual{Ooms_2026,
  title = {magick: Advanced Graphics and Image-Processing in R},
  author = {Jeroen Ooms},
  year = {2026},
  version = {R package 2.9.1},
  url = {https://CRAN.R-project.org/package=magick},
  doi = {10.32614/CRAN.package.magick},
}

@Manual{Pedersen_2025,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2025},
  version = {R package 1.3.2},
  url = {https://patchwork.data-imaginist.com},
}

@Manual{Perrier_2026,
  title = {shinyWidgets: Custom Inputs Widgets for Shiny},
  author = {Victor Perrier and Fanny Meyer and David Granjon},
  year = {2026},
  version = {R package 0.9.1},
  url = {https://CRAN.R-project.org/package=shinyWidgets},
  doi = {10.32614/CRAN.package.shinyWidgets},
}

@Manual{R_Core_Team_2025,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2025},
  url = {https://www.R-project.org/},
}

@Manual{Seo_2025,
  title = {bnma: Bayesian Network Meta-Analysis using 'JAGS'},
  author = {Michael Seo and Christopher Schmid},
  year = {2025},
  version = {R package 1.6.1},
  url = {https://CRAN.R-project.org/package=bnma},
}

@Book{Sievert_2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Manual{Slowikowski_2026,
  title = {ggrepel: Automatically Position Non-Overlapping Text Labels with
'ggplot2'},
  author = {Kamil Slowikowski},
  year = {2026},
  version = {R package 0.9.8},
  url = {https://CRAN.R-project.org/package=ggrepel},
  doi = {10.32614/CRAN.package.ggrepel},
}

@Manual{Sutton_2026,
  title = {metainsight: A 'shiny' Application for Network Meta-analysis},
  author = {Alex Sutton and Naomi Bradbury and Ryan Field and Tom Morris and Clareece Nevill and Janion Nevill and Rhiannon Owen and Simon E. H. Smart and Yiqiao Xin},
  version = {R package 7.0.0},
  year = {2026},
}

@Manual{van_Valkenhoef_2026,
  title = {gemtc: Network Meta-Analysis Using Bayesian Methods},
  author = {Gert {van Valkenhoef} and Joel Kuiper},
  year = {2026},
  version = {R package 1.1-1},
  url = {https://CRAN.R-project.org/package=gemtc},
  doi = {10.32614/CRAN.package.gemtc},
}

@Article{Viechtbauer_2010,
  title = {Conducting meta-analyses in {R} with the {metafor} package},
  author = {Wolfgang Viechtbauer},
  journal = {Journal of Statistical Software},
  year = {2010},
  volume = {36},
  number = {3},
  pages = {1--48},
  doi = {10.18637/jss.v036.i03},
}

@Book{Wickham_2016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{Wickham_2025,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2025},
  version = {R package 1.6.0},
  url = {https://stringr.tidyverse.org},
}

@Manual{Wickham_2025a,
  title = {svglite: An 'SVG' Graphics Device},
  author = {Hadley Wickham and Lionel Henry and Thomas Lin Pedersen and T Jake Luciani and Matthieu Decorde and Vaudor Lise},
  year = {2025},
  version = {R package 2.2.2},
  url = {https://svglite.r-lib.org},
}

@Manual{Wickham_2025ab,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2025},
  version = {R package 1.3.2},
  url = {https://CRAN.R-project.org/package=tidyr},
  doi = {10.32614/CRAN.package.tidyr},
}

@Manual{Wickham_2026,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain Fran{\c c}ois and Lionel Henry and Kirill M{\"u}ller and Davis Vaughan},
  year = {2026},
  version = {R package 1.2.1},
  url = {https://CRAN.R-project.org/package=dplyr},
  doi = {10.32614/CRAN.package.dplyr},
}

@InCollection{Xie_2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
}

@Book{Xie_2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@Book{Xie_2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  isbn = {9781138359338},
  url = {https://yihui.org/rmarkdown/},
}

@Book{Xie_2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  isbn = {9780367563837},
  url = {https://yihui.org/rmarkdown-cookbook},
}

@Manual{Xie_2025,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in {R}},
  author = {Yihui Xie},
  year = {2025},
  version = {R package 1.51},
  url = {https://yihui.org/knitr/},
}

@Manual{Xie_2025a,
  title = {DT: A Wrapper of the JavaScript Library 'DataTables'},
  author = {Yihui Xie and Joe Cheng and Xianying Tan and Garrick Aden-Buie},
  year = {2025},
  version = {R package 0.34.0},
  url = {https://github.com/rstudio/DT},
}

@Manual{Xie_2025ab,
  title = {markdown: Render Markdown with 'commonmark'},
  author = {Yihui Xie and JJ Allaire and Jeffrey Horner},
  year = {2025},
  version = {R package 2.0},
  url = {https://github.com/rstudio/markdown},
}

@Article{Youngflesh_2018,
  title = {MCMCvis: Tools to visualize, manipulate, and summarize MCMC output},
  author = {Casey Youngflesh},
  year = {2018},
  journal = {Journal of Open Source Software},
  volume = {3},
  number = {24},
  doi = {10.21105/joss.00640},
  pages = {640},
}
