# Generated by roxygen2: do not edit by hand

S3method(base::`dimnames<-`,ImmunData)
S3method(base::`names<-`,ImmunData)
S3method(dimnames,ImmunData)
S3method(dplyr::collect,ImmunData)
S3method(dplyr::compute,ImmunData)
S3method(dplyr::count,ImmunData)
S3method(dplyr::filter,ImmunData)
S3method(dplyr::mutate,ImmunData)
S3method(print,ImmunData)
export(ImmunData)
export(agg_receptors)
export(agg_repertoires)
export(agg_strata)
export(annotate)
export(annotate_anndata)
export(annotate_barcodes)
export(annotate_chains)
export(annotate_immundata)
export(annotate_receptors)
export(annotate_seurat)
export(assert_receptor_schema)
export(downsample_immundata)
export(filter_barcodes)
export(filter_immundata)
export(filter_receptors)
export(from_immunarch)
export(get_test_idata)
export(get_test_immundata)
export(imd_drop_cols)
export(imd_files)
export(imd_meta_schema)
export(imd_receptor_chains)
export(imd_receptor_features)
export(imd_rename_cols)
export(imd_repertoire_schema)
export(imd_schema)
export(imd_schema_sym)
export(make_barcode_prefix)
export(make_default_postprocessing)
export(make_default_preprocessing)
export(make_exclude_columns)
export(make_productive_filter)
export(make_receptor_schema)
export(make_seq_options)
export(mutate_immundata)
export(read_immundata)
export(read_metadata)
export(read_repertoires)
export(rename_strata)
export(test_receptor_schema)
export(write_immundata)
importFrom(R6,R6Class)
importFrom(checkmate,assert)
importFrom(checkmate,assertCharacter)
importFrom(checkmate,assertR6)
importFrom(checkmate,assert_character)
importFrom(checkmate,assert_choice)
importFrom(checkmate,assert_class)
importFrom(checkmate,assert_data_frame)
importFrom(checkmate,assert_directory_exists)
importFrom(checkmate,assert_file_exists)
importFrom(checkmate,assert_logical)
importFrom(checkmate,assert_string)
importFrom(checkmate,checkCharacter)
importFrom(checkmate,checkChoice)
importFrom(checkmate,checkR6)
importFrom(checkmate,check_character)
importFrom(checkmate,check_choice)
importFrom(checkmate,check_class)
importFrom(checkmate,check_data_frame)
importFrom(checkmate,check_function)
importFrom(checkmate,check_list)
importFrom(checkmate,check_scalar_na)
importFrom(checkmate,check_subset)
importFrom(checkmate,check_true)
importFrom(checkmate,makeAssertion)
importFrom(checkmate,test_character)
importFrom(checkmate,test_data_frame)
importFrom(checkmate,test_file_exists)
importFrom(checkmate,test_function)
importFrom(checkmate,test_list)
importFrom(checkmate,test_subset)
importFrom(cli,cli_abort)
importFrom(cli,cli_alert_danger)
importFrom(cli,cli_alert_info)
importFrom(cli,cli_alert_success)
importFrom(cli,cli_alert_warning)
importFrom(cli,cli_end)
importFrom(cli,cli_li)
importFrom(cli,cli_ol)
importFrom(cli,cli_ul)
importFrom(dplyr,all_of)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange_at)
importFrom(dplyr,collect)
importFrom(dplyr,compute)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,right_join)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,summarise)
importFrom(dplyr,union_all)
importFrom(duckplyr,as_duckdb_tibble)
importFrom(duckplyr,as_tbl)
importFrom(duckplyr,compute_parquet)
importFrom(duckplyr,duckdb_tibble)
importFrom(duckplyr,read_csv_duckdb)
importFrom(duckplyr,read_parquet_duckdb)
importFrom(ggplot2,autoplot)
importFrom(glue,glue)
importFrom(jsonlite,unbox)
importFrom(lifecycle,deprecated)
importFrom(readr,read_delim)
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(tibble,as_tibble)
importFrom(tools,file_ext)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)
importFrom(utils,tail)
