R: Archaeological and Historical Analysis

# Archaeological and Historical Analysis

## Documentation for package ‘arkhaia’ version 0.5.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

CR | Cressie-Read Power-Divergence Statistic
CR.data.frame | Cressie-Read Power-Divergence Statistic
CR.matrix | Cressie-Read Power-Divergence Statistic
CR.table | Cressie-Read Power-Divergence Statistic
CR.xtabs | Cressie-Read Power-Divergence Statistic
homogeneity | Homogeneity of Related Assemblages via Effect Size
homogeneity.effect_sizes | Homogeneity of Related Assemblages via Effect Size
homogeneity_LOO | Leave-One-Out Routine for Homogeneity of Related Assemblages
homogeneity_LOO.data.frame | Leave-One-Out Routine for Homogeneity of Related Assemblages
homogeneity_LOO.matrix | Leave-One-Out Routine for Homogeneity of Related Assemblages
homogeneity_LOO.table | Leave-One-Out Routine for Homogeneity of Related Assemblages
homogeneity_LOO.xtabs | Leave-One-Out Routine for Homogeneity of Related Assemblages
log_OR_pair | Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns
log_OR_pair.data.frame | Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns
log_OR_pair.matrix | Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns
log_OR_pair.table | Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns
log_OR_pair.xtabs | Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns
LSSA | Least Squares Spectral Analysis (LSSA)
LSSA.data.frame | Least Squares Spectral Analysis (LSSA)
LSSA.matrix | Least Squares Spectral Analysis (LSSA)
LSSA_LFI | Least Squares Spectral Analysis via Lowest Frequency Iteration (LSSA-LFI)
LSSA_LFI.data.frame | Least Squares Spectral Analysis via Lowest Frequency Iteration (LSSA-LFI)
LSSA_LFI.matrix | Least Squares Spectral Analysis via Lowest Frequency Iteration (LSSA-LFI)
LSSA_LFI_candidates | Linear Dependence of LSSA-LFI Candidate Models via AIC
LSSA_LFI_candidates.list | Linear Dependence of LSSA-LFI Candidate Models via AIC
LSSA_LFI_epoch | Period-Variable Pairwise Selection of Linearlly Dependent LSSA-LFI Models
LSSA_LFI_model | LSSA-LFI Model
LSSA_LFI_model.data.frame | LSSA-LFI Model
LSSA_LFI_model.matrix | LSSA-LFI Model
LSSA_LFI_pairwise | Pairwise Selection of Linearlly Dependent LSSA-LFI Models
LSSA_LFI_pairwise.list | Pairwise Selection of Linearlly Dependent LSSA-LFI Models
LSSA_LFI_validated | Validated Linear Dependence via LSSA-LFI
LSSA_LFI_validated.list | Validated Linear Dependence via LSSA-LFI
model_select | Model Selection of LSSA-LFI Candidates
model_select.LSSA_LFI_AIC | Model Selection of LSSA-LFI Candidates
pa_matrix | Presence-Absence Matrix
pa_matrix.data.frame | Presence-Absence Matrix
pa_matrix.matrix | Presence-Absence Matrix
pa_matrix.table | Presence-Absence Matrix
pa_matrix.xtabs | Presence-Absence Matrix
pois_rcens | Least Squares Fit of Poisson Distribution for Random Right-Censored Data
pois_rcens.data.frame | Least Squares Fit of Poisson Distribution for Random Right-Censored Data
pois_rcens.matrix | Least Squares Fit of Poisson Distribution for Random Right-Censored Data
pois_rcens.table | Least Squares Fit of Poisson Distribution for Random Right-Censored Data
pois_rcens.xtabs | Least Squares Fit of Poisson Distribution for Random Right-Censored Data
trace_pair | Trace Coefficient Pairwise between Columns
trace_pair.data.frame | Trace Coefficient Pairwise between Columns
trace_pair.matrix | Trace Coefficient Pairwise between Columns
trace_pair.table | Trace Coefficient Pairwise between Columns
trace_pair.xtabs | Trace Coefficient Pairwise between Columns
trim_epoch | Trim to Epoch
trim_epoch.data.frame | Trim to Epoch
trim_epoch.matrix | Trim to Epoch
trunc_pois | Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data
trunc_pois.data.frame | Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data
trunc_pois.matrix | Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data
trunc_pois.table | Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data
trunc_pois.xtabs | Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data
VB | Bias-Corrected Cramer's V
VB.data.frame | Bias-Corrected Cramer's V
VB.matrix | Bias-Corrected Cramer's V
VB.table | Bias-Corrected Cramer's V
VB.xtabs | Bias-Corrected Cramer's V
VB_LOO_type | Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts
VB_LOO_type.data.frame | Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts
VB_LOO_type.matrix | Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts
VB_LOO_type.table | Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts
VB_LOO_type.xtabs | Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts
VB_pair | Bias-Corrected Cramer's V Pairwise between Columns
VB_pair.data.frame | Bias-Corrected Cramer's V Pairwise between Columns
VB_pair.matrix | Bias-Corrected Cramer's V Pairwise between Columns
VB_pair.table | Bias-Corrected Cramer's V Pairwise between Columns
VB_pair.xtabs | Bias-Corrected Cramer's V Pairwise between Columns
VB_trunc_pois | Bias-Corrected Cramer's V for Random Right-Censored Data
VB_trunc_pois.data.frame | Bias-Corrected Cramer's V for Random Right-Censored Data
VB_trunc_pois.matrix | Bias-Corrected Cramer's V for Random Right-Censored Data
VB_trunc_pois.table | Bias-Corrected Cramer's V for Random Right-Censored Data
VB_trunc_pois.xtabs | Bias-Corrected Cramer's V for Random Right-Censored Data