DataTargetSpecies       Length and weight ranges for relevant species
GSAs                    List of GFCM Geographical subareas (GSAs)
LW                      Table of the Length-Weight parameters
MEDITS.to.dd            Conversion of MEDITS format coordinates in
                        decimal degrees format
Maturity_parameters     Maturity parameters
MedSea                  Shapefile of Mediterranean and Black Sea area
RSufi_files             Function to concatenate the R-sufi files of the
                        different years.
RoME                    Multiple Checks on MEDITS Trawl Survey Data
RoMEBScc                Continuous Quality Checks on Black Sea trawl
                        Survey Data
RoMEcc                  Continuous Quality Checks on MEDITS Trawl
                        Survey Data
TA                      TA
TB                      TB
TC                      TC
TE                      TE
TL                      TL
TM_list                 TM list
assTL                   TL association between categories and
                        sub-categories
checkHeader             Function to check the correctness of the
                        headers.
check_0_fieldsTA        Checks the presence of 0 fields in TA
check_G1_G2             Check of length measurements for G1 and G2
                        species
check_TE_TC             Function to verify the consistency between
                        individual data table (TE) and biological data
                        table (TC) respect to number of individuals.
check_abundance         Box-plots of swept-area-standardised abundance
                        indices
check_area              Check if TX files have the same area
check_associations_category_TL
                        Check correctness of TL categories
check_bridles_length    check of bridles length correctness
check_class             Check of field's class
check_consistencyTA_distance
                        Consistency check of distance in TA
check_consistencyTA_duration
                        Consistency check of hauls duration in TA
check_date_haul         Check of date consistency
check_depth             Check between start depth and end depth
check_dictionary        Check of the dictionary of specific fields
check_distance          Check of distance consistency
check_dm                Check of "WING_OPENING" and "VERTICAL_OPENING"
                        fields
check_haul_species_TCTB
                        Check species of TC in TB
check_hauls_TATB        Check of TA hauls in TB
check_hauls_TATL        Check presence of TA hauls in TL
check_hauls_TBTA        Check of TB hauls in TA
check_hauls_TLTA        Check presence of TL hauls in TA
check_identical_records
                        Check of identical records in TX tables
check_individual_weightTC
                        Check of observed and estimated total weight in
                        the haul
check_individual_weightTE
                        Consistency of individual weights (according to
                        length-weight relationship)
check_length            Check of length classes in TC
check_length_class_codeTC
                        Consistency check of LENGTH_CLASS
check_mat_stages        Consistency of maturity stages
check_nb_TE             Consistency of number of individuals sampled
                        for weight and ageing in TE
check_nb_per_sexTC      Consistency check of number of individuals
check_nbtotTB           Check total number of individuals in TB
check_nm_TB             Check of consistency in number per sex set "not
                        mandatory" in TB
check_no_empty_fields   Check empty fields in TA, TB, TC, TE and TL
check_numeric_range     Check of the values range in specific fields
check_position          Plot of haul positions
check_position_in_Med   Check of haul position in Mediterranean Sea
check_quadrant          Check start and end quadrant for each haul
check_quasiidentical_records
                        Function checking the presence of
                        quasi-identical records.
check_raising           Comprehensive consistency checks between MEDITS
                        'TB' and 'TC' files
check_rubincode         Function checking the correctness of species
                        MEDITS code and faunistic category according to
                        TM reference list
check_smallest_mature   Check for mature individuals below literature
                        thresholds in TC data
check_spawning_period   Check consistency of maturity stages with
                        respect to the spawning period
check_species_TBTC      Function checking if all the target species in
                        the catch data table (TB) are in Biological
                        data table (TC)
check_step_length_distr
                        The function verifies that in TC the length
                        measures are reported with the correct
                        precision.
check_stratum           Function that checks the consistency between
                        start and end depth according to the stratum.
check_stratum_code      Function to check the correct codification of
                        the strata in haul data table (TA).
check_subsampling       Function to warn the user about the presence of
                        subsamples <0.1 of the total catch.
check_swept_area        Check Swept Area Calculation and Plot
check_temperature       Function to check the consistency of the
                        temperature data stored in haul data table
                        (TA).
check_type              Consistency check of TYPE_OF_FILE field
check_unique_valid_haul
                        Function checking that among hauls with the
                        same code, only one must be valid.
check_weight            Check consistency between total weight and
                        number of individuals in MEDITS TB data.
check_weight_tot_nb     Function to check if, when the weight is not
                        null, also the number is not null.
check_year              Consistency check of YEAR field
classes                 Class of fields
create_catch            Function to create the R-sufi file capt.
create_haul             Function to create R-sufi file containing haul
                        data.
create_length           Function to create the R-sufi file taille.
create_strata           Function to create R-sufi file containing
                        strata surface data.
dd.distance             Estimation of haul distance
error.table             Summary table of the errors
graphs_TA               Function for qualitative checks of shooting
                        depth, warp length and wing opening in Haul
                        data table (TA).
haul_at_sea             Check of haul position on sea area
headers.conversion      Headers conversion for MEDITS tables
list_g1_g2              List of G1 and G2 species
mat_stages              Table of maturity stages
printError              Management of the error in logfile.
printError_cc           Management of the error in logfile.
run_RoME_app            Run the RoME Shiny application
scheme_individual_data
                        Summary of the individual data collected by
                        species
stratification_scheme   stratification_scheme
stratification_scheme_rapana
                        stratification_scheme_rapana
templateTA              Template haul data table (TA).
templateTB              Template catch data table (TB).
templateTC              Template biological data table (TC).
templateTE              Template individual data table (TE).
templateTL              TL table template
time                    allowed values for SHOOTING_TIME and
                        HAULING_TIME
